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AurieLSHGaussian, bayesloglin, bc3net, BioNetStat, BiRewire, BNSL, bnstruct, Boptbd, brainGraph, c3net, caOmicsV, causaloptim, cccd, centiserve, cglasso, clickstream, cooptrees, corclass, coreCT, CoRegNet, corkscrew, CorMut, covEB, cvxbiclustr, cvxclustr, DAPAR, DART, dc3net, dcGOR, Diderot, DiffCorr, diffee, dils, disparityfilter, dnet, dpa, DrInsight, ebdbNet, EditImputeCont, editrules, epihet, epistasis, ESEA, FamAgg, fasjem, fastclime, FEM, FisHiCal, Fletcher2013b, FlowSOM, flowSpy, G1DBN, GADAG, gdistance, GeneAnswers, genlasso, GNAR, gRapfa, graphkernels, GraphPAC, GSAR, hglasso, hipathia, iDINGO, igraphtosonia, InteractiveIGraph, jeek, JGL, JointNets, LEANR, linkcomm, LncPath, locits, LPKsample, manet, MEGENA, MetaLandSim, micropan, MineICA, Mirsynergy, MNS, modMax, mRMRe, multichull, multinet, ndexr, NEpiC, netassoc, netbiov, netboxr, NetPathMiner, NetSAM, NetSwan, OmnipathR, oposSOM, optbdmaeAT, optrcdmaeAT, optrees, OutrankingTools, PAGI, PANR, parsec, Path2PPI, Pi, postHoc, PoTRA, PPInfer, predictionet, qtlnet, ragt2ridges, RCA, rEMM, RNetLogo, RNewsflow, robin, rTRM, RWBP, sand, SARP.compo, SDDE, secrlinear, sglasso, ShapePattern, shp2graph, simule, sincell, sindyr, SOMbrero, soptdmaeA, splineTimeR, SRGnet, SubpathwayGMir, SubpathwayLNCE, SVN, SynExtend, synRNASeqNet, tcR, threejs, timeordered, tnet, VertexSort, wfg |
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adapr, adegenet, AFM, akc, alakazam, AlphaBeta, ANF, AnimalHabitatNetwork, arulesViz, ASpediaFI, automultinomial, BacArena, backbone, backShift, BallMapper, BASiNET, basket, batchelor, baycn, BayesMallows, BayesNetBP, BayesSUR, bcgam, BDgraph, beam, betalink, bibliometrix, BiocPkgTools, Bioi, BioNet, Bios2cor, BioTIP, bipartite, bnma, bnviewer, BoolNet, bootnet, BPEC, btergm, bwsTools, C443, CAMERA, cancerGI, CARNIVAL, cartograflow, Cascade, causact, causaleffect, CausalFX, CausalR, CDVine, CellNOptR, CellTrails, cellTree, CEMiTool, CePa, ceRNAnetsim, CeRNASeek, CeTF, cholera, CHRONOS, cicero, CINNA, CiteFuse, clipper, cliqueMS, CliquePercolation, clustree, clustringr, CoDiNA, coexnet, comato, concorR, contact, cooccurNet, corHMM, corpustools, crandep, cranly, cRegulome, crimelinkage, ctgGEM, cytometree, dartR, dcanr, DCD, DCGL, DDPNA, deaR, debrowser, deepdep, degreenet, delayed, DEsubs, dexterMST, DiagrammeR, diffcoexp, diffman, DiffNet, diffusionMap, diffusr, diffuStats, DirectedClustering, discourseGT, discretecdAlgorithm, dm, DmelSGI, dnapath, DNLC, dnr, Dominance, dragon, drake, DSviaDRM, dynetNLAResistance, dynwrap, EcoGenetics, ECoL, econet, EcoNetGen, economiccomplexity, edgebundleR, EDOIF, eegc, EGAD, EGAnet, egor, einet, emba, EmbedSOM, enrichplot, epicontacts, EpiILMCT, epiNEM, equSA, erah, esATAC, ess, EstimateGroupNetwork, EventPointer, evolqg, exp2flux, factorEx, fakemake, fastnet, fbRanks, FCMapper, fcoex, FedData, FELLA, FGNet, FindIt, FindMyFriends, flows, foodingraph, ForestGapR, forestRK, FrF2, fssemR, fusedest, gamCopula, GAPGOM, gDefrag, gemtc, genBaRcode, GeneClusterNet, GeneGeneInteR, geneNetBP, geneplast, GENESIS, GeneTonic, GenomicInteractions, geonetwork, ggdag, ggenealogy, ggm, ggnetwork, ggraph, gimme, gmat, GMPro, GNET2, gpart, gRain, grainscape, graph4lg, graphicalExtremes, graphicalVAR, graphlayouts, graphsim, graphTweets, gRbase, gRim, gromovlab, haploReconstruct, highcharter, HLSM, HTSSIP, huge, hypeR, iCARH, ICDS, iCellR, icosa, IDSpatialStats, igraphinshiny, imager, IMaGES, IMMAN, immcp, immuneSIM, imsig, INDEED, influenceR, influential, inlmisc, IntClust, intergraph, InterMineR, IntramiRExploreR, IOHanalyzer, iSEE, ITNr, Jdmbs, kangar00, KDViz, KEGGlincs, keyplayer, kknn, LACE, LANDD, lconnect, leiden, levi, lexRankr, linkprediction, Linnorm, LoopDetectR, lvm4net, malan, mAPKL, markovchain, martini, matie, mau, maxmatching, mazeGen, mcvis, Mercator, MetaboLouise, MetaboSignal, metacoder, MetID, miniCRAN, miRSM, miRspongeR, missSBM, mixOmics, MMUPHin, MODA, monocle, motifcluster, mpMap2, mppR, MRFcov, MRReg, MRS, mstknnclust, MTA, multilaterals, multinets, multinma, multivariance, MWASTools, nat, nat.templatebrains, neat, neatmaps, neo4r, netchain, netCoin, netcom, netdep, netdiffuseR, netDx, netgen, netgsa, netgwas, netjack, NetMix, NetOrigin, netrankr, netresponse, nets, NetworkChange, networkD3, NetworkDistance, networkGen, NetworkSim, networkTomography, NetworkToolbox, networktools, NFP, nhdplusTools, nimble, nlrx, NoRCE, nutriNetwork, OCNet, OncoSimulR, OpasnetUtils, OpenRepGrid.ic, ORION, OUwie, PAC, PAFit, PAFway, pandaR, PanVizGenerator, particles, pathfindR, PathwaySplice, Patterns, paxtoolsr, pcalg, pcFactorStan, pencopulaCond, perturbatr, perturbR, PGRdup, phangorn, phemd, phylopath, phyloregion, phyloseq, phyloseqGraphTest, phylosignal, phyloTop, piano, piecewiseSEM, pkggraph, pkgnet, PlackettLuce, plinkQC, PLNmodels, pmd, polymapR, pomdp, pop, poplite, poppr, PriorCD, prioritizr, ProjectManagement, propr, provGraphR, psSubpathway, psygenet2r, PubScore, pwOmics, qdap, qgraph, QuACN, quickPlot, R.temis, R3CPET, RaceID, Radviz, rags2ridges, RandomWalkRestartMH, RcextTools, RcmdrPlugin.RMTCJags, rcrimeanalysis, RCy3, RDS, ReactomePA, ReDaMoR, RedditExtractoR, RedeR, rescue, restlos, RevEcoR, rflexscan, rgexf, RITAN, rmangal, rmcfs, rmonad, RNAseqNet, Rnmr1D, Robocoap, robustrao, robustSingleCell, roots, roprov, RPANDA, rPref, RPS, rScudo, rsppfp, rsyntax, RTN, safedata, SBGNview, sBIC, scalpel, scClassify, scDblFinder, scHOT, scMerge, ScorePlus, scran, scRNAtools, scTensor, scTGIF, secuTrialR, SelectBoost, SEMID, SemNeT, semPlot, seqcombo, SeqDetect, seqHMM, SeqNet, SetRank, Seurat, SGSeq, sharpshootR, shazam, shock, SID, sidier, sigaR, sigmajs, sigmaNet, signet, signnet, simPATHy, SingleCellSignalR, SIRE, sismonr, skynet, SLICER, slingshot, smartR, SmCCNet, SMITE, smotefamily, snahelper, snowboot, SNscan, solitude, SourceSet, SpaDES.core, spathial, SpatialCPie, SpatialGraph, spatsoc, specr, SpidermiR, SplicingGraphs, SPONGE, spreadr, SSN, StarBioTrek, statGraph, stemmatology, stminsights, stplanr, STraTUS, STRINGdb, SubtypeDrug, SystemicR, TAShiny, TDA, ternarynet, textrank, tidygraph, tidySEM, tilemaps, Tlasso, TOHM, topoDistance, TPEA, tradeSeq, transcriptogramer, TreeAndLeaf, treefit, treemap, TRONCO, TSCAN, uSORT, vennLasso, VertexSimilarity, ViSEAGO, VOSONDash, vosonSML, VSE, WebGestaltR, whitechapelR, wiseR, wTO, XINA, xLLiM, XMRF |
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agop, anipaths, anocva, ape, bcp, beadplexr, bio3d, BiodiversityR, blackbox, BoomSpikeSlab, bsub, ccdrAlgorithm, clusterExperiment, CNORfeeder, CNVScope, ConnMatTools, Corbi, CoRegFlux, CovCombR, cppRouting, datapack, dbscan, destiny, DGCA, dimRed, diverse, dna, dodgr, dst, dyndimred, EBcoexpress, ecospat, eicm, eisa, factoextra, genscore, GGally, ghypernet, graphon, gsbm, HarmonizedTCGAData, HCAData, HelpersMG, hero, hydra, igraphdata, isa2, knitrBootstrap, lava, lfe, Libra, lionessR, loe, lolog, MACPET, madrat, maotai, MBNMAdose, MBNMAtime, MetNet, MineICA, mlr3pipelines, molic, MSG, nbTransmission, netSmooth, NetworkInference, NetworkRiskMeasures, NLMR, nosoi, oaqc, osmar, outbreaker2, PairViz, paramlink, pbixr, pcxn, pedtools, polmineR, quanteda, raster, rBiopaxParser, rbmn, RcisTarget, readsdr, recipes, repo, rIsing, rnetcarto, rodham, rquery, RScelestial, rtweet, rvinecopulib, Ryacas, Ryacas0, sbm, schex, selac, sensitivity, SEPIRA, SIMLR, sirt, sparsebn, sparsebnUtils, spdep, spdynmod, spectralGraphTopology, splatter, SplicingGraphs, stabm, stabs, stampr, stm, TCGAbiolinks, TDAmapper, textmineR, textplot, themetagenomics, tidyjson, timeOmics, TNC, treeio, treespace, TunePareto, visNetwork, vkR, vocaldia, widyr, xgboost |