Creation of linkage maps in polyploid species from marker dosage scores of an F1 cross from two heterozygous parents. Currently works for outcrossing diploid, autotriploid, autotetraploid and autohexaploid species, as well as segmental allotetraploids. Methods are described in a manuscript of Bourke et al. (2018) <doi:10.1093/bioinformatics/bty371>. Since version 1.1.0, both discrete and probabilistic genotypes are acceptable input; for more details on the latter see Liao et al. (submitted, 2020).
| Version: | 1.1.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | doParallel, foreach, igraph, knitr, MDSMap |
| Suggests: | ggplot2, hexbin, Hmisc, RColorBrewer, reshape2, rmarkdown |
| Published: | 2020-07-15 |
| Author: | Peter Bourke [aut, cre], Geert van Geest [aut], Roeland Voorrips [ctb], Yanlin Liao [ctb] |
| Maintainer: | Peter Bourke <pbourkey at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL] |
| NeedsCompilation: | no |
| CRAN checks: | polymapR results |
| Reference manual: | polymapR.pdf |
| Vignettes: |
Using genotype probabilities in polymapR How to use polymapR |
| Package source: | polymapR_1.1.0.tar.gz |
| Windows binaries: | r-devel: polymapR_1.1.0.zip, r-release: polymapR_1.1.0.zip, r-oldrel: polymapR_1.1.0.zip |
| macOS binaries: | r-release: polymapR_1.1.0.tgz, r-oldrel: polymapR_1.1.0.tgz |
| Old sources: | polymapR archive |
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