Tools for the exploration of distributions of phylogenetic trees. This package includes a 'shiny' interface which can be started from R using treespaceServer(). For further details see Jombart et al. (2017) <doi:10.1111/1755-0998.12676>.
| Version: | 1.1.3.2 |
| Depends: | R (≥ 3.4.0), ape, ade4 |
| Imports: | adegenet, adegraphics, adephylo, combinat, compiler, distory, fields, htmlwidgets, MASS, methods, parallel, phangorn, phytools, Rcpp, rgl, RLumShiny, scatterD3, shiny, shinyBS, utils |
| LinkingTo: | Rcpp |
| Suggests: | ggplot2, igraph, knitr, pander, RColorBrewer, reshape2, rmarkdown, testthat |
| Published: | 2019-12-08 |
| Author: | Thibaut Jombart [aut], Michelle Kendall [aut, cre], Jacob Almagro-Garcia [aut], Caroline Colijn [aut] |
| Maintainer: | Michelle Kendall <michelle.kendall at bdi.ox.ac.uk> |
| BugReports: | https://github.com/thibautjombart/treespace/issues |
| License: | MIT + file LICENSE |
| URL: | https://cran.r-project.org/package=treespace, https://github.com/thibautjombart/treespace |
| NeedsCompilation: | yes |
| Citation: | treespace citation info |
| Materials: | README |
| CRAN checks: | treespace results |
| Reference manual: | treespace.pdf |
| Vignettes: |
treespace worked example: Dengue trees treespace worked example: Transmission trees treespace: exploration of landscapes of phylogenetic trees treespace worked example: comparing by tip categories |
| Package source: | treespace_1.1.3.2.tar.gz |
| Windows binaries: | r-devel: treespace_1.1.3.2.zip, r-release: treespace_1.1.3.2.zip, r-oldrel: treespace_1.1.3.2.zip |
| macOS binaries: | r-release: treespace_1.1.3.2.tgz, r-oldrel: treespace_1.1.3.2.tgz |
| Old sources: | treespace archive |
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