Can be used for simulation of organisms living in communities (Bauer and Zimmermann (2017) <doi:10.1371/journal.pcbi.1005544>). Each organism is represented individually and genome scale metabolic models determine the uptake and release of compounds. Biological processes such as movement, diffusion, chemotaxis and kinetics are available along with data analysis techniques.
| Version: | 1.8.2 |
| Depends: | R (≥ 3.5.0), sybil (≥ 2.1.3), ReacTran (≥ 1.4.2), deSolve (≥ 1.12), Matrix (≥ 1.2) |
| Imports: | methods, utils, stats, graphics, ggplot2, reshape2, glpkAPI, plyr, Rcpp, igraph, stringr, R.matlab |
| LinkingTo: | Rcpp, RcppArmadillo, RcppEigen |
| Suggests: | parallel, knitr, rmarkdown |
| Published: | 2020-05-20 |
| Author: | Eugen Bauer [aut], Johannes Zimmermann [aut, cre] |
| Maintainer: | Johannes Zimmermann <j.zimmermann at iem.uni-kiel.de> |
| BugReports: | https://github.com/euba/BacArena/issues |
| License: | GPL-3 | file LICENSE |
| URL: | https://BacArena.github.io/ |
| NeedsCompilation: | yes |
| Materials: | README NEWS |
| CRAN checks: | BacArena results |
| Reference manual: | BacArena.pdf |
| Vignettes: |
BacArena-Introduction |
| Package source: | BacArena_1.8.2.tar.gz |
| Windows binaries: | r-devel: BacArena_1.8.2.zip, r-release: BacArena_1.8.2.zip, r-oldrel: BacArena_1.8.2.zip |
| macOS binaries: | r-release: BacArena_1.8.2.tgz, r-oldrel: BacArena_1.8.2.tgz |
| Old sources: | BacArena archive |
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