It makes the creation of networks from sequences of RNA, with this is done the abstraction of characteristics of these networks with a methodology of threshold for the purpose of making a classification between the classes of the sequences. There are four data present in the 'BASiNET' package, "sequences", "sequences2", "sequences-predict" and "sequences2-predict" with 11, 10, 11 and 11 sequences respectively. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) <doi:10.1186/1471-2105-15-311>, these sequences are used to run examples. The BASiNET was published on Nucleic Acids Research, (ITO, Eric; KATAHIRA, Isaque; VICENTE, Fábio; PEREIRA, Felipe; LOPES, Fabrício, 2018) <doi:10.1093/nar/gky462>.
| Version: | 0.0.4 |
| Depends: | R (≥ 3.4.0) |
| Imports: | igraph, Biostrings, RWeka, randomForest, rmcfs, grDevices, graphics, stats, rJava |
| Suggests: | knitr, rmarkdown |
| Published: | 2018-10-02 |
| Author: | Eric Augusto Ito |
| Maintainer: | Eric Augusto Ito <ericaugustoito at hotmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | BASiNET results |
| Reference manual: | BASiNET.pdf |
| Vignettes: |
Classification of mRNA and lncRNA sequences |
| Package source: | BASiNET_0.0.4.tar.gz |
| Windows binaries: | r-devel: BASiNET_0.0.4.zip, r-release: BASiNET_0.0.4.zip, r-oldrel: BASiNET_0.0.4.zip |
| macOS binaries: | r-release: BASiNET_0.0.4.tgz, r-oldrel: BASiNET_0.0.4.tgz |
| Old sources: | BASiNET archive |
Please use the canonical form https://CRAN.R-project.org/package=BASiNET to link to this page.