Tools for the statistical analysis of persistent homology and for density clustering. For that, this package provides an R interface for the efficient algorithms of the C++ libraries 'GUDHI' <http://gudhi.gforge.inria.fr/>, 'Dionysus' <http://www.mrzv.org/software/dionysus/>, and 'PHAT' <https://bitbucket.org/phat-code/phat/>. This package also implements the methods in Fasy et al. (2014) <doi:10.1214/14-AOS1252> and Chazal et al. (2014) <doi:10.1145/2582112.2582128> for analyzing the statistical significance of persistent homology features.
| Version: | 1.6.9 |
| Depends: | R (≥ 3.1.0) |
| Imports: | FNN, Rcpp (≥ 0.11.0), igraph, parallel, scales |
| LinkingTo: | BH (≥ 1.69.0-1), Rcpp, RcppEigen |
| Suggests: | testthat, lintr |
| Published: | 2019-12-01 |
| Author: | Brittany T. Fasy, Jisu Kim, Fabrizio Lecci, Clement Maria, David L. Millman, Vincent Rouvreau. The included GUDHI is authored by Clement Maria, Dionysus by Dmitriy Morozov, and PHAT by Ulrich Bauer, Michael Kerber, and Jan Reininghaus. |
| Maintainer: | Jisu Kim <jisu.kim at inria.fr> |
| License: | GPL-3 |
| NeedsCompilation: | yes |
| SystemRequirements: | C++11, gmp |
| Materials: | README NEWS |
| CRAN checks: | TDA results |
| Reference manual: | TDA.pdf |
| Vignettes: |
Introduction to TDA |
| Package source: | TDA_1.6.9.tar.gz |
| Windows binaries: | r-devel: TDA_1.6.9.zip, r-release: TDA_1.6.9.zip, r-oldrel: TDA_1.6.9.zip |
| macOS binaries: | r-release: TDA_1.6.9.tgz, r-oldrel: TDA_1.6.9.tgz |
| Old sources: | TDA archive |
| Reverse imports: | archiDART, pterrace |
| Reverse suggests: | kernelTDA |
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