Facilities for running simulations from ordinary differential equation (ODE) models, such as pharmacometrics and other compartmental models. A compilation manager translates the ODE model into C, compiles it, and dynamically loads the object code into R for improved computational efficiency. An event table object facilitates the specification of complex dosing regimens (optional) and sampling schedules. NB: The use of this package requires both C and Fortran compilers, for details on their use with R please see Section 6.3, Appendix A, and Appendix D in the "R Administration and Installation" manual. Also the code is mostly released under GPL. The VODE and LSODA are in the public domain. The information is available in the inst/COPYRIGHTS. You can also obtain the archived SnakeCharmR for python integration from CRAN archives <https://cran.r-project.org/src/contrib/Archive/SnakeCharmR/> or <https://github.com/nlmixrdevelopment/SnakeCharmR>.
| Version: | 0.9.2-0 |
| Depends: | R (≥ 3.6.0) |
| Imports: | knitr, Matrix, PreciseSums (≥ 0.3), Rcpp (≥ 0.12.3), brew, cli, dparser (≥ 0.1.8), ggplot2, inline, magrittr, memoise, methods, mvnfast, pillar, rex, sys, units (≥ 0.6-0), utils, assertthat, lotri |
| LinkingTo: | dparser (≥ 0.1.8), Rcpp (≥ 0.12.3), RcppArmadillo (≥ 0.9.300.2.0), PreciseSums (≥ 0.3) |
| Suggests: | DT, data.table (≥ 1.12.4), nlme, shiny, tcltk, testthat, usethis, devtools, covr, rmarkdown, SnakeCharmR, dplyr (≥ 0.8.0), tidyr, tibble, curl, gridExtra, microbenchmark, scales, stringi, htmltools, reticulate, rlang, installr, learnr, remotes, crayon, xgxr, digest, vdiffr, ggrepel |
| Published: | 2020-03-13 |
| Author: | Matthew L. Fidler 
[aut],
Melissa Hallow [aut],
Wenping Wang [aut, cre],
Zufar Mulyukov [ctb],
Justin Wilkins
[ctb],
Simon Frost [ctb],
Goro Fuji [ctb],
Morwenn [ctb],
Heng Li [ctb],
Yu Feng [ctb],
Alan Hindmarsh [ctb],
Linda Petzold [ctb],
Ernst Hairer [ctb],
Gerhard Wanner [ctb],
J Colinge [ctb],
Hadley Wickham [ctb],
G Grothendieck [ctb],
Robert Gentleman [ctb],
Daniel C. Dillon [ctb],
Ross Ihaka [ctb],
Cleve Moler [ctb],
Jack Dongarra [ctb],
R core team [cph] |
| Maintainer: | Wenping Wang <wwang8198 at gmail.com> |
| BugReports: | https://github.com/nlmixrdevelopment/RxODE/issues |
| License: | GPL (≥ 3) |
| Copyright: | see file COPYRIGHTS |
| URL: | https://nlmixrdevelopment.github.io/RxODE/ |
| NeedsCompilation: | yes |
| Language: | en-US |
| Citation: | RxODE citation info |
| In views: | HighPerformanceComputing, Pharmacokinetics |
| CRAN checks: | RxODE results |
| Reference manual: | RxODE.pdf |
| Vignettes: |
Introduction to RxODE RxODE ODE solving syntax |
| Package source: | RxODE_0.9.2-0.tar.gz |
| Windows binaries: | r-devel: RxODE_0.9.2-0.zip, r-release: RxODE_0.9.2-0.zip, r-oldrel: RxODE_0.9.2-0.zip |
| macOS binaries: | r-release: RxODE_0.9.2-0.tgz, r-oldrel: RxODE_0.9.2-0.tgz |
| Old sources: | RxODE archive |
| Reverse imports: | nlmixr |
| Reverse linking to: | nlmixr |
| Reverse suggests: | xgxr |
Please use the canonical form https://CRAN.R-project.org/package=RxODE to link to this page.