A reliable alternative to popular microbiome analysis R packages. We provide standard tools as well as novel extensions on standard analyses to improve interpretability and the analyst’s ability to communicate results, all while maintaining object malleability to encourage open source collaboration.
| Version: | 1.43 |
| Depends: | R (≥ 3.5.0), tidyverse (≥ 1.3.0) |
| Imports: | magrittr (≥ 1.5.0), ggrepel (≥ 0.8.1), MASS (≥ 7.3-51.4), VGAM (≥ 1.1-2), rlang (≥ 0.3.4), car (≥ 3.0-3), lme4 (≥ 1.1-21), vegan (≥ 2.5-5), Matrix (≥ 1.2-17), cowplot (≥ 0.9.4), lsr (≥ 0.5), shapes (≥ 1.2.4), Evomorph (≥ 0.9), ThreeWay (≥ 1.1.3), factoextra (≥ 1.0.5), ade4 (≥ 1.7-13), scatterplot3d (≥ 0.3-41), gridExtra (≥ 2.3), plotly (≥ 4.9.0), png (≥ 0.1-7), latex2exp (≥ 0.4.0), broom (≥ 0.5.0), plyr (≥ 1.8.0), dplyr (≥ 0.8.0), ggplot2 (≥ 3.2.0), purrr (≥ 0.3.0), stringr (≥ 1.4.0), tibble (≥ 2.1.0), tidyr (≥ 1.0.0), scales (≥ 1.1.0) |
| Suggests: | knitr, markdown, roxygen2, rmarkdown |
| Published: | 2020-03-28 |
| Author: | Charlie Carpenter [aut, cre], Dan Frank [aut], Kayla Williamson [aut], Rachel Johnson [ctb] |
| Maintainer: | Charlie Carpenter <charles.carpenter at cuanschutz.edu> |
| BugReports: | https://github.com/CharlieCarpenter/tidyMicro |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | tidyMicro results |
| Reference manual: | tidyMicro.pdf |
| Vignettes: |
The tidyMicro Pipeline |
| Package source: | tidyMicro_1.43.tar.gz |
| Windows binaries: | r-devel: tidyMicro_1.43.zip, r-release: tidyMicro_1.43.zip, r-oldrel: tidyMicro_1.43.zip |
| macOS binaries: | r-release: tidyMicro_1.43.tgz, r-oldrel: tidyMicro_1.43.tgz |
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