[aut, cre]Simulation of segments shared identical-by-descent (IBD) by pedigree members. Using sex specific recombination rates along the human genome (Halldorsson et al. (2019) <doi:10.1126/science.aau1043>), phased chromosomes are simulated for all pedigree members. Additional features include calculation of realised IBD coefficients and plots of IBD segment distributions.
| Version: | 1.2 |
| Depends: | R (≥ 3.5.0), pedtools (≥ 0.9.4) |
| Imports: | Rcpp, ggplot2, glue, ribd (≥ 1.1.0) |
| LinkingTo: | Rcpp |
| Suggests: | testthat |
| Published: | 2020-07-11 |
| Author: | Magnus Dehli Vigeland
[aut, cre] |
| Maintainer: | Magnus Dehli Vigeland <m.d.vigeland at medisin.uio.no> |
| License: | GPL-3 |
| URL: | https://github.com/magnusdv/ibdsim2 |
| NeedsCompilation: | yes |
| Language: | en-GB |
| Materials: | README NEWS |
| CRAN checks: | ibdsim2 results |
| Reference manual: | ibdsim2.pdf |
| Package source: | ibdsim2_1.2.tar.gz |
| Windows binaries: | r-devel: ibdsim2_1.2.zip, r-release: ibdsim2_1.2.zip, r-oldrel: ibdsim2_1.2.zip |
| macOS binaries: | r-release: ibdsim2_1.2.tgz, r-oldrel: ibdsim2_1.2.tgz |
| Old sources: | ibdsim2 archive |
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