The previous built-in recombination map (based on Kong et al., 2010) is replaced with one based on Halldorsson et al. (2019), using GRCh38 coordinates. For reasons of speed and efficiency, the built-in map is a thinned version of the published map, keeping around 60 000 data points.
New features
New function haploDraw() for visualising IBD patterns
The internal data structure for genetic maps has been rewritten.
New functions loadMap() and customMap() for loading built-in and user-prepared maps.
Bug fixes
Fixed CRAN warnings about self-assignment in Rcpp code.