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| customMap | Custom recombination map |
| estimateCoeffs | Estimation of one- and two-locus relatedness coefficients |
| estimateIdentity | Estimation of one- and two-locus relatedness coefficients |
| estimateInbreeding | Estimation of one- and two-locus relatedness coefficients |
| estimateKappa | Estimation of one- and two-locus relatedness coefficients |
| estimateKinship | Estimation of one- and two-locus relatedness coefficients |
| estimateTwoLocusIdentity | Estimation of one- and two-locus relatedness coefficients |
| estimateTwoLocusInbreeding | Estimation of one- and two-locus relatedness coefficients |
| estimateTwoLocusKappa | Estimation of one- and two-locus relatedness coefficients |
| estimateTwoLocusKinship | Estimation of one- and two-locus relatedness coefficients |
| haploDraw | Draw haplotypes onto a pedigree plot |
| ibdsim | IBD simulation |
| ibdsim2 | ibdsim2: Simulation of chromosomal regions shared by family members |
| loadMap | Load a built-in genetic map |
| plotSegmentDistribution | Scatter plots of IBD segment distributions |
| profileSimIBD | Simulate markers on a given IBD pattern |
| realised | Realised relatedness |
| realisedIdentity | Realised relatedness |
| realisedInbreeding | Realised relatedness |
| realisedKappa | Realised relatedness |
| realisedKinship | Realised relatedness |
| uniformMap | Uniform recombination maps |
| zeroIBD | Probability of zero IBD |