A set of functions to generate and format results from statistical analyses of a wide range of high throughput experiments that can then be uploaded into the 'BART' (Bio-Statistical Analysis Reporting Tool) 'shiny' app <https://github.com/jcardenas14/BART>. The app provides users with tools to visualize and efficiently sift through large amounts of data and results.
| Version: | 1.0.1 |
| Depends: | R (≥ 3.4.0) |
| Imports: | clValid (≥ 0.6-6), data.table (≥ 1.10.4), fastcluster (≥ 1.1.22), ggplot2 (≥ 2.2.1), grid (≥ 3.3.3), gtools (≥ 3.5.0), limma (≥ 3.30.13), NMF (≥ 0.20.6), pca3d (≥ 0.10), psych (≥ 1.7.3.21), qusage (≥ 2.6.1), RColorBrewer (≥ 1.1-2), reshape2 (≥ 1.4.2), rmarkdown (≥ 1.5), scales (≥ 0.4.1), shiny (≥ 1.0.3), shinydashboard (≥ 0.5.3), shinyjs (≥ 0.9), statmod (≥ 1.2.2), stats (≥ 3.3.3), stringr (≥ 1.2.0), tools (≥ 3.3.3), VennDiagram (≥ 1.6.17) |
| Suggests: | DESeq2 (≥ 1.14.1), edgeR (≥ 3.16.5), knitr (≥ 1.15.1), SummarizedExperiment (≥ 1.1.6), testthat |
| Published: | 2018-03-13 |
| Author: | Jacob Cardenas [aut, cre], Jacob Turner [aut], Derek Blankenship [aut] |
| Maintainer: | Jacob Cardenas <jacob.cardenas at bswhealth.org> |
| License: | GPL-2 | GPL-3 |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | genBart results |
| Reference manual: | genBart.pdf |
| Vignettes: |
genBart package Vignette |
| Package source: | genBart_1.0.1.tar.gz |
| Windows binaries: | r-devel: genBart_1.0.1.zip, r-release: genBart_1.0.1.zip, r-oldrel: genBart_1.0.1.zip |
| macOS binaries: | r-release: genBart_1.0.1.tgz, r-oldrel: not available |
| Old sources: | genBart archive |
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