Provides a framework to perform Non-negative Matrix Factorization (NMF). The package implements a set of already published algorithms and seeding methods, and provides a framework to test, develop and plug new/custom algorithms. Most of the built-in algorithms have been optimized in C++, and the main interface function provides an easy way of performing parallel computations on multicore machines.
| Version: | 0.23.0 |
| Depends: | R (≥ 3.0.0), methods, utils, pkgmaker (≥ 0.20), registry, rngtools (≥ 1.2.3), cluster |
| Imports: | graphics, stats, stringr (≥ 1.0.0), digest, grid, grDevices, gridBase, colorspace, RColorBrewer, foreach, doParallel, ggplot2, reshape2, BiocManager, Biobase |
| Suggests: | fastICA, doMPI, bigmemory (≥ 4.2), synchronicity (≥ 1.3.2), corpcor, xtable, devtools, knitr, bibtex, RUnit, mail |
| Published: | 2020-08-01 |
| Author: | Renaud Gaujoux, Cathal Seoighe |
| Maintainer: | Nicolas Sauwen <nicolas.sauwen at openanalytics.eu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | http://renozao.github.io/NMF |
| NeedsCompilation: | yes |
| Citation: | NMF citation info |
| Materials: | README NEWS |
| CRAN checks: | NMF results |
| Reference manual: | NMF.pdf |
| Vignettes: |
An introduction to the package NMF NMF: generating heatmaps |
| Package source: | NMF_0.23.0.tar.gz |
| Windows binaries: | r-devel: NMF_0.23.0.zip, r-release: NMF_0.23.0.zip, r-oldrel: NMF_0.23.0.zip |
| macOS binaries: | r-release: NMF_0.23.0.tgz, r-oldrel: NMF_0.23.0.tgz |
| Old sources: | NMF archive |
| Reverse depends: | CancerSubtypes, InterSIM, IntNMF, MutationalPatterns, signeR, SomaticSignatures, SparseSignatures |
| Reverse imports: | biosvd, CAMTHC, chromswitch, clusterExperiment, debCAM, diceR, genBart, hNMF, miRSM, NanoStringQCPro, pcaExplorer, projectR, sigminer, SomaticSignatures, spectralAnalysis, SpNMF |
| Reverse suggests: | AUCell, BEARscc, butcher, cola, crassmat, dimRed, iTOP, maftools, MAST, scater, scone |
| Reverse enhances: | fdm2id |
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