An approach to filter out and/or identify synechococcus type cyanobacteria cells from all particles measured via flow cytometry. It combines known characteristics of these cyanobacteria strains alongside gating techniques developed by Mehrnoush, M. et al. (2015) <doi:10.1093/bioinformatics/btu677> in the 'flowDensity' package to identify and separate these cyanobacteria cells from other cell types. Aside the gating techniques in the 'flowDensity' package, an EM style clustering technique is also developed to identify these cyanobacteria cell populations.
| Version: | 0.1.3 |
| Depends: | R (≥ 3.4), Biobase (≥ 2.40.0) |
| Imports: | flowCore (≥ 1.42.3), flowDensity (≥ 1.10.0), graphics (≥ 3.6.0), grDevices (≥ 3.6.0), methods (≥ 3.5.1), RColorBrewer (≥ 1.1-2), Rdpack (≥ 0.11-0), stats (≥ 3.6.0), stringr (≥ 1.3.1), utils (≥ 3.6.0) |
| Suggests: | dplyr, magrittr, knitr, rmarkdown, tidyr |
| Published: | 2020-01-09 |
| Author: | Oluwafemi Olusoji [aut, cre], Aerts Marc [ctb], Delaender Frederik [ctb], Neyens Thomas [ctb], Spaak jurg [aut] |
| Maintainer: | Oluwafemi Olusoji <oluwafemi.olusoji at uhasselt.be> |
| BugReports: | https://github.com/fomotis/cyanoFilter/issues |
| License: | GPL-3 |
| URL: | https://github.com/fomotis/cyanoFilter |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | cyanoFilter results |
| Reference manual: | cyanoFilter.pdf |
| Vignettes: |
cyanoFilter: An Automated Framework for Identifying synechoccus type cyanobacteria population in Flow Cytometry |
| Package source: | cyanoFilter_0.1.3.tar.gz |
| Windows binaries: | r-devel: cyanoFilter_0.1.3.zip, r-release: cyanoFilter_0.1.3.zip, r-oldrel: cyanoFilter_0.1.3.zip |
| macOS binaries: | r-release: not available, r-oldrel: cyanoFilter_0.1.3.tgz |
| Old sources: | cyanoFilter archive |
Please use the canonical form https://CRAN.R-project.org/package=cyanoFilter to link to this page.