cyanoFilter-package |
cyanoFilter: A package to identify and/or assign indicators to BS4, BS5 cyanobacteria cells contained in water sample. |
bs4_nc |
gates out or assign indicators to Synechococcus cyanobacteria cells in the bottom right of the 2-D space. |
bs5_nc |
gates out or assign indicators to Synechococcus cyanobacteria cells in the top right of the 2-D space. |
celldebris_emclustering |
identifies Synechococcus cyanobacteria cells and Debris in a flowfile using an EM style algorithm. |
celldebris_nc |
gates out or assign indicators to Synechococcus cyanobacteria cells. |
cellmargin |
Removes or assign indicators to margin events. |
cluster_plot |
plots the expression matrix of a flowframe analysed with celldebris_emclustering. |
cyanoFilter |
cyanoFilter: A package to identify and/or assign indicators to BS4, BS5 cyanobacteria cells contained in water sample. |
debris_inc |
gates out or assign indicators to debris particle. |
debris_nc |
gates out or assign indicators to debris particle. |
goodfcs |
indicates if measurement from a flowfile is good or bad. |
lnTrans |
log transforms the expression matrix of a flowframe |
mvnorm |
multivariate normal density |
nona |
Removes NA values from the expression matrix of a flow cytometer file. |
noneg |
Removes negative values from the expression matrix |
pair_plot |
plots the expression matrix of a flowframe. Note that, it takes some time to display the plot. |
retain |
Decides if a file should be retiained or removed based on its status. |