Coalescent simulators can rapidly simulate biological sequences evolving according to a given model of evolution. You can use this package to specify such models, to conduct the simulations and to calculate additional statistics from the results. It relies on existing simulators for doing the simulation, and currently supports the programs 'ms', 'msms' and 'scrm'. It also supports finite-sites mutation models by combining the simulators with the program 'seq-gen'.
| Version: | 0.6.0 |
| Depends: | R (≥ 3.1.0) |
| Imports: | assertthat (≥ 0.1), digest, methods, parallel, R6 (≥ 2.0.1), Rcpp (≥ 0.11.0), rehh (≥ 3.0.0), scrm (≥ 1.6.0-2), stats, utils |
| LinkingTo: | Rcpp, RcppArmadillo (≥ 0.3.810.0) |
| Suggests: | abc (≥ 2.0), knitr, phyclust (≥ 0.1-16), rmarkdown, testthat (≥ 0.11.0) |
| Published: | 2020-01-19 |
| Author: | Paul Staab [aut, cre], Dirk Metzler [aut, ths], Jorge E. Amaya Romero [ctb] |
| Maintainer: | Paul Staab <develop at paulstaab.de> |
| BugReports: | https://github.com/statgenlmu/coala/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/statgenlmu/coala |
| NeedsCompilation: | yes |
| Citation: | coala citation info |
| Materials: | README NEWS |
| CRAN checks: | coala results |
| Reference manual: | coala.pdf |
| Vignettes: |
Using coala for ABC Calculating Summary Statistics for Genetic Data Examples Extending coala Installing ms, msms and seqgen Introduction |
| Package source: | coala_0.6.0.tar.gz |
| Windows binaries: | r-devel: coala_0.6.0.zip, r-release: coala_0.6.0.zip, r-oldrel: coala_0.6.0.zip |
| macOS binaries: | r-release: coala_0.6.0.tgz, r-oldrel: coala_0.6.0.tgz |
| Old sources: | coala archive |
| Reverse suggests: | jaatha, jackalope |
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