A coalescent simulator that allows the rapid simulation of biological sequences under neutral models of evolution. Different to other coalescent based simulations, it has an optional approximation parameter that allows for high accuracy while maintaining a linear run time cost for long sequences. It is optimized for simulating massive data sets as produced by Next- Generation Sequencing technologies for up to several thousand sequences.
| Version: | 1.7.3-1 |
| Depends: | R (≥ 3.1.0) |
| Imports: | Rcpp (≥ 0.11.2) |
| LinkingTo: | Rcpp |
| Suggests: | ape, knitr, rmarkdown, testthat (≥ 0.9.0) |
| Published: | 2018-11-19 |
| Author: | Paul Staab [aut, cre, cph], Zhu Sha [aut, cph], Dirk Metzler [aut, cph, ths], Gerton Lunter [aut, cph, ths] |
| Maintainer: | Paul Staab <develop at paulstaab.de> |
| BugReports: | https://github.com/scrm/scrm-r/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/scrm/scrm-r |
| NeedsCompilation: | yes |
| SystemRequirements: | C++11 |
| Citation: | scrm citation info |
| Materials: | README NEWS |
| CRAN checks: | scrm results |
| Reference manual: | scrm.pdf |
| Vignettes: |
scrm-Arguments scrm-TreesForApe |
| Package source: | scrm_1.7.3-1.tar.gz |
| Windows binaries: | r-devel: scrm_1.7.3-1.zip, r-release: scrm_1.7.3-1.zip, r-oldrel: scrm_1.7.3-1.zip |
| macOS binaries: | r-release: scrm_1.7.3-1.tgz, r-oldrel: scrm_1.7.3-1.tgz |
| Old sources: | scrm archive |
| Reverse imports: | coala |
| Reverse suggests: | jackalope |
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