Characterizing environmental microbiota diversity using amplicon-based next generation sequencing (NGS) data. Functions are developed to manipulate operational taxonomic unit (OTU) table, perform descriptive and inferential statistics, and generate publication-quality plots.
| Version: | 1.2.1.7 |
| Depends: | vegan, ggplot2, stats |
| Imports: | RColorBrewer, gplots, plyr, reshape2, scales, labdsv, grid, gridExtra, ggmap, permute, VennDiagram, data.table, FD, MASS, RgoogleMaps, lattice, reshape, ade4, phangorn, phytools, utils, graphics, grDevices, ape |
| Suggests: | testthat, mapproj, gtable, indicspecies, Heatplus |
| Published: | 2018-05-15 |
| Author: | Wen Chen, Joshua Simpson, C. Andre Levesque |
| Maintainer: | Wen Chen <Wen.Chen at agr.gc.ca> |
| BugReports: | https://bitbucket.org/Wen_Chen/ram_releases/issues/ |
| License: | MIT + file LICENSE |
| Copyright: | Government of Canada |
| URL: | https://cran.r-project.org/package=RAM, https://bitbucket.org/Wen_Chen/ram_releases/src/ |
| NeedsCompilation: | no |
| Citation: | RAM citation info |
| Materials: | NEWS ChangeLog |
| CRAN checks: | RAM results |
| Reference manual: | RAM.pdf |
| Package source: | RAM_1.2.1.7.tar.gz |
| Windows binaries: | r-devel: RAM_1.2.1.7.zip, r-release: RAM_1.2.1.7.zip, r-oldrel: RAM_1.2.1.7.zip |
| macOS binaries: | r-release: RAM_1.2.1.7.tgz, r-oldrel: RAM_1.2.1.7.tgz |
| Old sources: | RAM archive |
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