Collection of high-level, machine- and OS-independent tools for making deeply reproducible and reusable content in R. The two workhorse functions are Cache and prepInputs; these allow for: nested caching, robust to environments, and objects with environments (like functions); and data retrieval and processing in continuous workflow environments. In all cases, efforts are made to make the first and subsequent calls of functions have the same result, but vastly faster at subsequent times by way of checksums and digesting. Several features are still under active development, including cloud storage of cached objects, allowing for sharing between users. Several advanced options are available, see ?reproducibleOptions.
Version: | 1.2.0 |
Depends: | R (≥ 3.5) |
Imports: | crayon, data.table (≥ 1.10.4), DBI, digest, fpCompare, glue, magrittr, methods, Require, raster, RSQLite, rlang, sp (≥ 1.4-2), utils |
Suggests: | covr, fastdigest, fasterize, future, gdalUtils, googledrive, httr, qs, knitr, parallel, RCurl (≥ 1.95-4.8), rgdal, rgeos, rmarkdown, sf, stats, testthat, TimeWarp |
Published: | 2020-08-03 |
Author: | Eliot J B McIntire [aut, cre], Alex M Chubaty [aut], Tati Micheletti [ctb], Ceres Barros [ctb], Ian Eddy [ctb], Her Majesty the Queen in Right of Canada, as represented by the Minister of Natural Resources Canada [cph] |
Maintainer: | Eliot J B McIntire <eliot.mcintire at canada.ca> |
BugReports: | https://github.com/PredictiveEcology/reproducible/issues |
License: | GPL-3 |
URL: | https://reproducible.predictiveecology.org, https://github.com/PredictiveEcology/reproducible |
NeedsCompilation: | no |
SystemRequirements: | 'unrar' (Linux/macOS) or '7-Zip' (Windows) to work with '.rar' files. |
Language: | en-CA |
Materials: | README NEWS |
CRAN checks: | reproducible results |
Reference manual: | reproducible.pdf |
Vignettes: |
Using alternate database backends for Cache Introduction to Cache |
Package source: | reproducible_1.2.0.tar.gz |
Windows binaries: | r-devel: reproducible_1.2.0.zip, r-release: reproducible_1.2.0.zip, r-oldrel: reproducible_1.2.0.zip |
macOS binaries: | r-release: reproducible_1.2.0.tgz, r-oldrel: reproducible_1.1.1.tgz |
Old sources: | reproducible archive |
Reverse depends: | SpaDES.core |
Reverse imports: | SpaDES, SpaDES.addins, SpaDES.tools |
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