Eco-phylogenetic and community phylogenetic analyses. Keeps community ecological and phylogenetic data matched up and comparable using 'comparative.comm' objects. Wrappers for common community phylogenetic indices ('pez.shape', 'pez.evenness', 'pez.dispersion', and 'pez.dissimilarity' metrics). Implementation of Cavender-Bares (2004) correlation of phylogenetic and ecological matrices ('fingerprint.regression'). Phylogenetic Generalised Linear Mixed Models (PGLMMs; 'pglmm') following Ives & Helmus (2011) and Rafferty & Ives (2013). Simulation of null assemblages, traits, and phylogenies ('scape', 'sim.meta.comm').
| Version: | 1.2-1 |
| Depends: | ape (≥ 3.1-4) |
| Imports: | caper (≥ 0.5-2), picante (≥ 1.6-2), quantreg (≥ 5.05), mvtnorm (≥ 1.0-0), vegan (≥ 2.0-10), ade4 (≥ 1.6-2), apTreeshape (≥ 1.4-5), FD (≥ 1.0-12), Matrix (≥ 1.1-4), methods (≥ 3.1.0), animation (≥ 2.4-0), phytools (≥ 0.6-60) |
| Suggests: | knitr (≥ 1.6), lme4 (≥ 1.1-7), formatR (≥ 1.7) |
| Published: | 2020-07-26 |
| Author: | William D. Pearse, Marc W. Cadotte, Jeannine Cavender-Bares, Anthony R. Ives, Caroline Tucker, Steve C. Walker, Matthew R. Helmus |
| Maintainer: | William D. Pearse <will.pearse at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Citation: | pez citation info |
| Materials: | NEWS |
| CRAN checks: | pez results |
| Reference manual: | pez.pdf |
| Vignettes: |
pez-intro pez-pglmm-overview |
| Package source: | pez_1.2-1.tar.gz |
| Windows binaries: | r-devel: pez_1.2-1.zip, r-release: pez_1.2-1.zip, r-oldrel: pez_1.2-1.zip |
| macOS binaries: | r-release: pez_1.2-1.tgz, r-oldrel: pez_1.2-1.tgz |
| Old sources: | pez archive |
| Reverse suggests: | phyr |
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