apTreeshape: Analyses of Phylogenetic Treeshape
Simulation and analysis
of phylogenetic tree topologies using statistical indices. It
is a companion library of the 'ape' package. It provides
additional functions for reading, plotting, manipulating
phylogenetic trees. It also offers convenient web-access to
public databases, and enables testing null models of
macroevolution using corrected test statistics. Trees of class
"phylo" (from 'ape' package) can be converted easily.
Implements methods described in Bortolussi et al. (2005)
<doi:10.1093/bioinformatics/bti798> and Maliet et al. (2017)
<doi:10.1101/224295>.
| Version: |
1.5-0 |
| Depends: |
R (≥ 2.0.0), ape |
| Imports: |
quantreg, cubature, coda, pbapply |
| Published: |
2018-04-04 |
| Author: |
Nicolas Bortolussi, Michael Blum, Eric Durand, Olivier Francois, Odile Maliet |
| Maintainer: |
Michael Blum <michael.blum at univ-grenoble-alpes.fr> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
no |
| Materials: |
README |
| In views: |
Phylogenetics |
| CRAN checks: |
apTreeshape results |
Downloads:
Reverse dependencies:
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