Provides functions for parsing ThermoFisher MSF files produced by Proteome Discoverer 1.4.x (see <https://thermofisher.com> for more information). This package makes it easy to view individual peptide information, including peak areas, and to map peptides to locations within the parent protein sequence. This package also estimates protein abundances from peak areas and across multiple technical replicates. The author of this package is not affiliated with ThermoFisher Scientific in any way.
| Version: | 0.1.1 |
| Depends: | R (≥ 3.2.4) |
| Imports: | dplyr (≥ 0.5.0), dbplyr, DBI, lazyeval, RSQLite (≥ 1.0.0), stats, stringr (≥ 1.1.0), tidyr (≥ 0.6.0) |
| Suggests: | testthat (≥ 1.0.2), knitr, rmarkdown, ggplot2 |
| Published: | 2017-12-09 |
| Author: | Benjamin Jack [aut, cre] |
| Maintainer: | Benjamin Jack <benjamin.r.jack at gmail.com> |
| BugReports: | https://github.com/benjaminjack/parsemsf/issues |
| License: | GPL-2 |
| URL: | https://github.com/benjaminjack/parsemsf/ |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | parsemsf results |
| Reference manual: | parsemsf.pdf |
| Vignettes: |
Introduction to ParseMSF |
| Package source: | parsemsf_0.1.1.tar.gz |
| Windows binaries: | r-devel: parsemsf_0.1.1.zip, r-release: parsemsf_0.1.1.zip, r-oldrel: parsemsf_0.1.1.zip |
| macOS binaries: | r-release: parsemsf_0.1.1.tgz, r-oldrel: parsemsf_0.1.1.tgz |
| Old sources: | parsemsf archive |
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