Performs QTL mapping analysis for balanced and for multi-environment and multi-trait analysis using mixed models. Balanced population, single trait, single environment QTL mapping is performed through marker-regression (Haley and Knott (1992) <doi:10.1038/hdy.1992.131>, Martinez and Curnow (1992) <doi:10.1007/BF00222330>, while multi-environment and multi-trait QTL mapping is performed through linear mixed models. These functions could use any of the following populations: double haploid, F2, recombinant inbred lines, back-cross, and 4-way crosses. Performs a Single Marker Analysis, a Single Interval Mapping, or a Composite Interval Mapping analysis, and then constructs a final model with all of the relevant QTL.
| Version: | 0.1.1 |
| Depends: | R (≥ 2.10) |
| Imports: | qtl, lme4, lattice, pastecs, stringr, graphics, utils, grDevices, stats |
| Suggests: | knitr, rmarkdown, testthat |
| Published: | 2016-07-12 |
| Author: | Lucia Gutierrez [aut], Gaston Quero [aut, cre], Schubert Fernandez [aut], Sofia Brandariz [aut], Sebastian Simondi [ctb] |
| Maintainer: | Gaston Quero <gastonquero at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Citation: | lmem.qtler citation info |
| CRAN checks: | lmem.qtler results |
| Reference manual: | lmem.qtler.pdf |
| Vignettes: |
Vignette Title |
| Package source: | lmem.qtler_0.1.1.tar.gz |
| Windows binaries: | r-devel: lmem.qtler_0.1.1.zip, r-release: lmem.qtler_0.1.1.zip, r-oldrel: lmem.qtler_0.1.1.zip |
| macOS binaries: | r-release: lmem.qtler_0.1.1.tgz, r-oldrel: lmem.qtler_0.1.1.tgz |
| Old sources: | lmem.qtler archive |
Please use the canonical form https://CRAN.R-project.org/package=lmem.qtler to link to this page.