[aut, cre]Contains tools to analyze minimal residual disease and cell-free DNA fragmentation from aligned sequencing data. More details on the methods can be found in: Amjad Alkodsi, Leo Meriranta, Annika Pasanen, Sirpa Leppä (2020) <doi:10.1101/2020.01.27.912790>.
| Version: | 0.4.0 |
| Depends: | R (≥ 3.6.0) |
| Imports: | magrittr, dplyr (≥ 0.8.3), tidyr (≥ 1.0.0), purrr (≥ 0.3.2), Rsamtools (≥ 2.0.0), assertthat (≥ 0.2.1), GenomicRanges, IRanges, GenomeInfoDb, BiocGenerics, BSgenome, GenomicAlignments, rlang (≥ 0.4.0), Biostrings, methods, furrr (≥ 0.1.0), ellipsis (≥ 0.3.0), VariantAnnotation (≥ 1.30.1) |
| Suggests: | BSgenome.Hsapiens.UCSC.hg19, testthat (≥ 2.1.0), ggplot2, knitr, rmarkdown, covr, pkgdown |
| Published: | 2020-03-04 |
| Author: | Amjad Alkodsi
[aut, cre] |
| Maintainer: | Amjad Alkodsi <amjad.alkodsi at gmail.com> |
| BugReports: | https://github.com/alkodsi/ctDNAtools/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/alkodsi/ctDNAtools |
| NeedsCompilation: | no |
| Citation: | ctDNAtools citation info |
| Materials: | README |
| CRAN checks: | ctDNAtools results |
| Reference manual: | ctDNAtools.pdf |
| Vignettes: |
Analysis of ctDNA sequencing data with ctDNAtools |
| Package source: | ctDNAtools_0.4.0.tar.gz |
| Windows binaries: | r-devel: ctDNAtools_0.4.0.zip, r-release: ctDNAtools_0.4.0.zip, r-oldrel: ctDNAtools_0.4.0.zip |
| macOS binaries: | r-release: ctDNAtools_0.4.0.tgz, r-oldrel: not available |
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