[aut,
cre]An interface for performing all stages of 'ADMIXTOOLS' analyses (<https://reich.hms.harvard.edu/software>) entirely from R. Wrapper functions (D, f4, f3, etc.) completely automate the generation of intermediate configuration files, run 'ADMIXTOOLS' programs on the command-line, and parse output files to extract values of interest. This allows users to focus on the analysis itself instead of worrying about low-level technical details. A set of complementary functions for processing and filtering of data in the 'EIGENSTRAT' format is also provided.
| Version: | 0.9.1 |
| Depends: | R (≥ 3.6.0) |
| Imports: | dplyr, magrittr, readr, stringr, tibble, stats, rlang, utils |
| Suggests: | covr, glue, testthat, tidyr, knitr, rmarkdown, tidyverse |
| Published: | 2020-07-03 |
| Author: | Martin Petr [aut,
cre] |
| Maintainer: | Martin Petr <contact at bodkan.net> |
| BugReports: | https://github.com/bodkan/admixr/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/bodkan/admixr |
| NeedsCompilation: | no |
| SystemRequirements: | ADMIXTOOLS suite of command-line utilities for population genetics. See <https://reich.hms.harvard.edu/software> for the most recent installation instructions and further information. |
| Materials: | README NEWS |
| CRAN checks: | admixr results |
| Reference manual: | admixr.pdf |
| Vignettes: |
Fitting qpAdm models with a 'rotation' strategy Tutorial and basic overview of the admixr R package |
| Package source: | admixr_0.9.1.tar.gz |
| Windows binaries: | r-devel: admixr_0.9.1.zip, r-release: admixr_0.9.1.zip, r-oldrel: admixr_0.9.1.zip |
| macOS binaries: | r-release: admixr_0.9.1.tgz, r-oldrel: admixr_0.9.1.tgz |
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