Last updated on 2020-08-07 01:49:33 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.9.1 | 3.65 | 34.51 | 38.16 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.9.1 | 2.71 | 26.88 | 29.59 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.9.1 | 53.13 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.9.1 | 45.19 | OK | |||
| r-devel-windows-ix86+x86_64 | 0.9.1 | 9.00 | 72.00 | 81.00 | OK | |
| r-patched-linux-x86_64 | 0.9.1 | 3.62 | 34.11 | 37.73 | OK | |
| r-patched-solaris-x86 | 0.9.1 | 74.50 | WARN | |||
| r-release-linux-x86_64 | 0.9.1 | 3.43 | 34.28 | 37.71 | OK | |
| r-release-macos-x86_64 | 0.9.1 | OK | ||||
| r-release-windows-ix86+x86_64 | 0.9.1 | 10.00 | 52.00 | 62.00 | OK | |
| r-oldrel-macos-x86_64 | 0.9.1 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.9.1 | 5.00 | 52.00 | 57.00 | OK |
Version: 0.9.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘qpAdm.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
ADMIXTOOLS programs required by admixr are not in your $PATH variable.
At the very least, the following programs should be available:
qp3Pop, qpDstat, qpF4ratio, qpAdm, qpWave
Make sure to modify the $PATH variable in your .Renviron file so
that it points to the directory containing the ADMIXTOOLS programs.
sh: qpAdm: not found
sh: qpAdm: not found
Quitting from lines 165-174 (qpAdm.Rmd)
Error: processing vignette 'qpAdm.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘qpAdm.Rmd’
--- re-building ‘tutorial.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
ADMIXTOOLS programs required by admixr are not in your $PATH variable.
At the very least, the following programs should be available:
qp3Pop, qpDstat, qpF4ratio, qpAdm, qpWave
Make sure to modify the $PATH variable in your .Renviron file so
that it points to the directory containing the ADMIXTOOLS programs.
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.0 ──
✔ ggplot2 3.3.2 ✔ purrr 0.3.4
✔ tibble 3.0.1 ✔ dplyr 1.0.0
✔ tidyr 1.1.0 ✔ stringr 1.4.0
✔ readr 1.3.1 ✔ forcats 0.5.0
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag() masks stats::lag()
sh: column: not found
Quitting from lines 145-146 (tutorial.Rmd)
Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
error in running command: 'Illegal seek'
--- failed re-building ‘tutorial.Rmd’
SUMMARY: processing the following files failed:
‘qpAdm.Rmd’ ‘tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86