Identify peaks in ChIP-seq data with biological replicates using a one-sided quasi-likelihood ratio test in quasi-Poisson or quasi-negative binomial models.
| Version: | 0.1-6 |
| Imports: | edgeR, mgcv, pracma, quadprog, Rsamtools, GenomicAlignments, GenomicRanges, IRanges, csaw (≥ 1.12.0), SummarizedExperiment, BiocGenerics, S4Vectors, RMySQL |
| Suggests: | nleqslv, knitr, rmarkdown |
| Published: | 2018-07-27 |
| Author: | Emily Goren [aut, cre], Steve Lund [aut] (The author of the QuasiSeq package, from which all functions were modified to produce this package.), Long Qu [aut] (The author of the QuasiSeq package, from which all functions were modified to produce this package.), Ian Marschner [aut] (The author of glm2::glm.fit2, which was modified slightly leading to glm.fit3 in this package.), Daniel Gerhard [aut] (The author of mcprofile::orglm.fit, which was modified slightly and used under the same name in this package.), R Core Team [aut] (The author of stats::glm.fit, which was modified slightly leading to glm.fit3 in this package.) |
| Maintainer: | Emily Goren <emily.goren at gmail.com> |
| BugReports: | https://github.com/emilygoren/BinQuasi/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/emilygoren/BinQuasi |
| NeedsCompilation: | yes |
| Materials: | README |
| CRAN checks: | BinQuasi results |
| Reference manual: | BinQuasi.pdf |
| Vignettes: |
BinQuasi Quick Start Guide |
| Package source: | BinQuasi_0.1-6.tar.gz |
| Windows binaries: | r-devel: BinQuasi_0.1-6.zip, r-release: BinQuasi_0.1-6.zip, r-oldrel: BinQuasi_0.1-6.zip |
| macOS binaries: | r-release: not available, r-oldrel: not available |
| Old sources: | BinQuasi archive |
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