A toolkit for analyzing stratified population genetic data. Functions are provided for summarizing and checking loci (haploid, diploid, and polyploid), single stranded DNA sequences, calculating most population subdivision metrics, and running external programs such as structure and fastsimcoal. The package is further described in Archer et al (2016) <doi:10.1111/1755-0998.12559>.
| Version: | 2.4.905 |
| Depends: | R (≥ 3.5.0) |
| Imports: | ape, apex (≥ 1.0.3), adegenet, dplyr (≥ 0.7.6), tibble (≥ 1.4.2), tidyr (≥ 0.8.1), purrr (≥ 0.2.5), data.table (≥ 1.11.4), copula, DT, genepop (≥ 1.0.5), ggplot2, graphics, grid, gridExtra, Hmisc (≥ 4.1), magrittr (≥ 1.5), methods, pegas (≥ 0.11), phangorn (≥ 2.4.0), RColorBrewer, Rcpp, readr, rlang (≥ 0.3.0.1), rmetasim, stats, stringi, swfscMisc (≥ 1.3), utils |
| LinkingTo: | Rcpp |
| Suggests: | knitr, rmarkdown, testthat, qgraph, hierfstat |
| Published: | 2020-02-28 |
| Author: | Eric Archer [aut, cre], Paula Adams [aut], Brita Schneiders [aut], Sarina Fernandez [aut], Warren Asfazadour [aut] |
| Maintainer: | Eric Archer <eric.archer at noaa.gov> |
| BugReports: | https://github.com/EricArcher/strataG/issues |
| License: | GPL-2 | GPL-3 [expanded from: GNU General Public License] |
| URL: | https://github.com/EricArcher/strataG |
| NeedsCompilation: | yes |
| Citation: | strataG citation info |
| Materials: | README |
| CRAN checks: | strataG results |
| Reference manual: | strataG.pdf |
| Vignettes: |
Installing External Programs Creating and manipulating gtypes Tests of population structure Working with sequences Genotype and sequence summaries |
| Package source: | strataG_2.4.905.tar.gz |
| Windows binaries: | r-devel: strataG_2.4.905.zip, r-release: strataG_2.4.905.zip, r-oldrel: strataG_2.4.905.zip |
| macOS binaries: | r-release: strataG_2.4.905.tgz, r-oldrel: strataG_2.4.905.tgz |
| Old sources: | strataG archive |
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