[aut, cre],
Andrea Marion Marquard
[rev],
Tejal Joshi [rev],
Aron Charles Eklund
[aut, ths]Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.
| Version: | 3.0.0 |
| Depends: | R (≥ 3.2.0) |
| Imports: | pbapply, squash, iotools, readr, seqminer, copynumber |
| Suggests: | testthat, knitr, rmarkdown, rmdformats |
| Published: | 2019-05-09 |
| Author: | Francesco Favero
[aut, cre],
Andrea Marion Marquard
[rev],
Tejal Joshi [rev],
Aron Charles Eklund
[aut, ths] |
| Maintainer: | Francesco Favero <favero.francesco at gmail.com> |
| BugReports: | https://bitbucket.org/sequenzatools/sequenza/issues |
| License: | GPL-3 |
| URL: | https://sequenzatools.bitbucket.io, Mailing list: https://groups.google.com/forum/#!forum/sequenza-user-group |
| NeedsCompilation: | no |
| SystemRequirements: | pandoc (>= 1.12.3) |
| Citation: | sequenza citation info |
| Materials: | NEWS |
| CRAN checks: | sequenza results |
| Reference manual: | sequenza.pdf |
| Vignettes: |
Sequenza User Guide |
| Package source: | sequenza_3.0.0.tar.gz |
| Windows binaries: | r-devel: sequenza_3.0.0.zip, r-release: sequenza_3.0.0.zip, r-oldrel: sequenza_3.0.0.zip |
| macOS binaries: | r-release: not available, r-oldrel: not available |
| Old sources: | sequenza archive |
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