Implementation the outbreak analysis method described by Klinkenberg et al (2017) <doi:10.1371/journal.pcbi.1005495>. Simulate outbreaks, analyse datasets by creating samples from the posterior distribution with a Markov-Chain Monte Carlo sampler, and summarize the output.
| Version: | 0.2.0 |
| Depends: | R (≥ 3.1.0), phangorn, ape |
| Imports: | Rcpp (≥ 0.12.1), methods, stats, stringr, utils |
| LinkingTo: | Rcpp |
| Suggests: | coda, phytools, OutbreakTools, testthat, knitr, rmarkdown |
| Published: | 2017-07-30 |
| Author: | Don Klinkenberg [aut, cre] |
| Maintainer: | Don Klinkenberg <don at xs4all.nl> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| Citation: | phybreak citation info |
| Materials: | README NEWS |
| CRAN checks: | phybreak results |
| Reference manual: | phybreak.pdf |
| Vignettes: |
Introduction to phybreak package |
| Package source: | phybreak_0.2.0.tar.gz |
| Windows binaries: | r-devel: phybreak_0.2.0.zip, r-release: phybreak_0.2.0.zip, r-oldrel: phybreak_0.2.0.zip |
| macOS binaries: | r-release: phybreak_0.2.0.tgz, r-oldrel: phybreak_0.2.0.tgz |
| Old sources: | phybreak archive |
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