Fits multivariate (Brownian Motion, Early Burst, ACDC, Ornstein-Uhlenbeck and Shifts) models of continuous traits evolution on trees and time series. 'mvMORPH' also proposes high-dimensional multivariate comparative tools (linear models using Generalized Least Squares and multivariate tests) based on penalized likelihood. See Clavel et al. (2015) <doi:10.1111/2041-210X.12420>, Clavel et al. (2019) <doi:10.1093/sysbio/syy045>, and Clavel & Morlon (2020) <doi:10.1093/sysbio/syaa010>.
| Version: | 1.1.3 |
| Depends: | R (≥ 3.5.0), phytools, ape, corpcor, subplex |
| Imports: | stats, spam, graphics, glassoFast, parallel, pbmcapply |
| Suggests: | knitr, car |
| Published: | 2020-06-12 |
| Author: | Julien Clavel, with contributions from Aaron King, and Emmanuel Paradis |
| Maintainer: | Julien Clavel <julien.clavel at hotmail.fr> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2.0)] |
| URL: | https://github.com/JClavel/mvMORPH |
| NeedsCompilation: | yes |
| Citation: | mvMORPH citation info |
| Materials: | README NEWS |
| In views: | Phylogenetics |
| CRAN checks: | mvMORPH results |
| Reference manual: | mvMORPH.pdf |
| Vignettes: |
How to use mvMORPH? mvMORPH: an R package for fitting multivariate evolutionary models |
| Package source: | mvMORPH_1.1.3.tar.gz |
| Windows binaries: | r-devel: mvMORPH_1.1.3.zip, r-release: mvMORPH_1.1.3.zip, r-oldrel: mvMORPH_1.1.3.zip |
| macOS binaries: | r-release: mvMORPH_1.1.3.tgz, r-oldrel: mvMORPH_1.1.3.tgz |
| Old sources: | mvMORPH archive |
| Reverse imports: | ratematrix, RPANDA |
| Reverse suggests: | bite, RRphylo |
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