Given an RNA-seq derived cell-by-gene matrix and an DNA-seq derived copy number segmentation, LIAYSON predicts the number of clones present in a tumor, their size, the copy number profile of each clone and the clone membership of each single cell (Andor, N. & Lau, B., et al. (2018) <doi:10.1101/445932>).
| Version: | 1.0.3 |
| Depends: | R (≥ 3.0) |
| Imports: | phangorn, RColorBrewer, ape, parallel, plyr, matlab, biomaRt, distances, arules, e1071, proxy, gplots, methods |
| Suggests: | mclust, fpc, NbClust, modeest, pastecs, vegan |
| Published: | 2020-04-30 |
| Author: | Noemi Andor |
| Maintainer: | Noemi Andor <liayson.scRNA.R at gmail.com> |
| License: | GPL-2 |
| URL: | https://github.com/noemiandor/liayson, https://groups.google.com/d/forum/liayson |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | liayson results |
| Reference manual: | liayson.pdf |
| Vignettes: |
liayson |
| Package source: | liayson_1.0.3.tar.gz |
| Windows binaries: | r-devel: liayson_1.0.3.zip, r-release: liayson_1.0.3.zip, r-oldrel: liayson_1.0.3.zip |
| macOS binaries: | r-release: liayson_1.0.3.tgz, r-oldrel: liayson_1.0.3.tgz |
| Old sources: | liayson archive |
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