Fits joint species distribution models ('jSDM') in a hierarchical Bayesian framework (Warton et al. 2015 <doi:10.1016/j.tree.2015.09.007>). The Gibbs sampler is written in C++. It uses 'Rcpp', 'Armadillo' and 'GSL' to maximize computation efficiency.
Version: | 0.1.0 |
Imports: | Rcpp (≥ 1.0.0), graphics, stats, coda, corrplot |
LinkingTo: | Rcpp, RcppArmadillo, RcppGSL |
Suggests: | knitr, raster, sp, rmarkdown, bookdown, testthat, boral |
Published: | 2019-07-02 |
Author: | Ghislain Vieilledent
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Maintainer: | Ghislain Vieilledent <ghislain.vieilledent at cirad.fr> |
BugReports: | https://github.com/ghislainv/jSDM/issues |
License: | GPL-3 | file LICENSE |
URL: | https://ecology.ghislainv.fr/jSDM, https://github.com/ghislainv/jSDM |
NeedsCompilation: | yes |
SystemRequirements: | GNU GSL |
Materials: | README NEWS |
CRAN checks: | jSDM results |
Reference manual: | jSDM.pdf |
Vignettes: |
Get started with jSDM |
Package source: | jSDM_0.1.0.tar.gz |
Windows binaries: | r-devel: jSDM_0.1.0.zip, r-release: jSDM_0.1.0.zip, r-oldrel: jSDM_0.1.0.zip |
macOS binaries: | r-release: jSDM_0.1.0.tgz, r-oldrel: jSDM_0.1.0.tgz |
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