A package for building hierarchical block matrices from association matrices and for performing multi-scale analysis. It specifically targets chromatin contact maps, generated from high-throughput chromosome conformation capture data, such as 5C and Hi-C, and provides methods for detecting movements and for computing chain hierarchy and region communicability across scales.
| Version: | 1.0 |
| Depends: | R (≥ 3.0.2) |
| Imports: | Matrix, foreach, doParallel |
| Published: | 2015-02-01 |
| Author: | Yoli Shavit |
| Maintainer: | Yoli Shavit <ys388 at cam.ac.uk> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| CRAN checks: | hbm results |
| Reference manual: | hbm.pdf |
| Package source: | hbm_1.0.tar.gz |
| Windows binaries: | r-devel: hbm_1.0.zip, r-release: hbm_1.0.zip, r-oldrel: hbm_1.0.zip |
| macOS binaries: | r-release: hbm_1.0.tgz, r-oldrel: hbm_1.0.tgz |
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