A pipeline with high specificity and sensitivity in extracting proteins from the RefSeq database (National Center for Biotechnology Information). Manual identification of gene families is highly time-consuming and laborious, requiring an iterative process of manual and computational analysis to identify members of a given family. The pipelines implements an automatic approach for the identification of gene families based on the conserved domains that specifically define that family. See Die et al. (2018) <doi:10.1101/436659> for more information and examples.
Version: | 1.0.11 |
Depends: | R (≥ 3.4.0) |
Imports: | rentrez (≥ 1.2.1), stringr (≥ 1.4.0), dplyr (≥ 0.8.0.1), httr (≥ 1.4.0), utils, curl (≥ 3.3) |
Suggests: | knitr, rmarkdown |
Published: | 2019-04-04 |
Author: | Jose V. Die |
Maintainer: | Jose V. Die <jose.die at uco.es> |
BugReports: | https://github.com/NCBI-Hackathons/GeneHummus/issues |
License: | MIT + file LICENSE |
URL: | https://github.com/NCBI-Hackathons/GeneHummus |
NeedsCompilation: | no |
Materials: | README |
CRAN checks: | geneHummus results |
Reference manual: | geneHummus.pdf |
Package source: | geneHummus_1.0.11.tar.gz |
Windows binaries: | r-devel: geneHummus_1.0.11.zip, r-release: geneHummus_1.0.11.zip, r-oldrel: geneHummus_1.0.11.zip |
macOS binaries: | r-release: geneHummus_1.0.11.tgz, r-oldrel: geneHummus_1.0.11.tgz |
Old sources: | geneHummus archive |
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