Contains a number of comparative 'phylogenetic' methods,
mostly focusing on analysing diversification and character
evolution. Contains implementations of 'BiSSE' (Binary State
'Speciation' and Extinction) and its unresolved tree extensions,
'MuSSE' (Multiple State 'Speciation' and Extinction), 'QuaSSE',
'GeoSSE', and 'BiSSE-ness' Other included methods include Markov
models of discrete and continuous trait evolution and constant rate
'speciation' and extinction.
| Version: |
0.9-13 |
| Depends: |
R (≥ 2.10), methods, ape |
| Imports: |
deSolve (≥ 1.7), graphics, grDevices, stats, subplex, Rcpp (≥ 0.10.0) |
| LinkingTo: |
Rcpp |
| Suggests: |
numDeriv, minqa, lubridate, expm, caper, geiger |
| Published: |
2020-01-16 |
| Author: |
Richard G. FitzJohn [aut, cre],
Emma Goldberg [aut],
Karen Magnuson-Ford [aut],
Roger Sidje [aut] |
| Maintainer: |
Richard G. FitzJohn <rich.fitzjohn at gmail.com> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: |
http://www.zoology.ubc.ca/prog/diversitree |
| NeedsCompilation: |
yes |
| SystemRequirements: |
fftw3 (>= 3.1.2), gsl (>= 1.15) |
| Citation: |
diversitree citation info |
| Materials: |
README ChangeLog |
| In views: |
Phylogenetics |
| CRAN checks: |
diversitree results |