Functions to describe sampling and diversity dynamics of fossil occurrence datasets (e.g. from the Paleobiology Database). The package includes methods to calculate range- and occurrence-based metrics of taxonomic richness, extinction and origination rates, along with traditional sampling measures. A powerful subsampling tool is also included that implements frequently used sampling standardization methods in a multiple bin-framework. The plotting of time series and the occurrence data can be simplified by the functions incorporated in the package, as well other calculations, such as environmental affinities and extinction selectivity testing. Details can be found in: Kocsis, A.T.; Reddin, C.J.; Alroy, J. and Kiessling, W. (2019) <doi:10.1101/423780>.
| Version: | 0.8.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | Rcpp, stats, graphics, grDevices |
| LinkingTo: | Rcpp |
| Suggests: | knitr, rmarkdown, vegan, icosa |
| Published: | 2019-06-12 |
| Author: | Adam T. Kocsis, John Alroy, Carl J. Reddin, Wolfgang Kiessling |
| Maintainer: | Adam T. Kocsis <adam.t.kocsis at gmail.com> |
| BugReports: | https://github.com/divDyn/r_package/issues |
| License: | CC BY 4.0 |
| NeedsCompilation: | yes |
| Citation: | divDyn citation info |
| Materials: | NEWS |
| CRAN checks: | divDyn results |
| Reference manual: | divDyn.pdf |
| Vignettes: |
Handout to the R package divDyn v0.8.0 for diversity dynamics using fossil sampling data |
| Package source: | divDyn_0.8.0.tar.gz |
| Windows binaries: | r-devel: divDyn_0.8.0.zip, r-release: divDyn_0.8.0.zip, r-oldrel: divDyn_0.8.0.zip |
| macOS binaries: | r-release: divDyn_0.8.0.tgz, r-oldrel: divDyn_0.8.0.tgz |
| Old sources: | divDyn archive |
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