chromoR provides users with a statistical pipeline for analysing chromosomal interactions data (Hi-C data).It combines wavelet methods and a Bayesian approach for correction (bias and noise) and comparison (detecting significant changes between Hi-C maps) of Hi-C contact maps.In addition, it also support detection of change points in 1D Hi-C contact profiles.
| Version: | 1.0 |
| Depends: | R (≥ 2.15.2), haarfisz, gdata |
| Published: | 2014-02-11 |
| Author: | Yoli Shavit |
| Maintainer: | Yoli Shavit <ys388 at cam.ac.uk> |
| License: | GPL-2 | GPL-3 [expanded from: GPL] |
| NeedsCompilation: | no |
| CRAN checks: | chromoR results |
| Reference manual: | chromoR.pdf |
| Package source: | chromoR_1.0.tar.gz |
| Windows binaries: | r-devel: chromoR_1.0.zip, r-release: chromoR_1.0.zip, r-oldrel: chromoR_1.0.zip |
| macOS binaries: | r-release: chromoR_1.0.tgz, r-oldrel: chromoR_1.0.tgz |
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