Methods for the group testing identification problem: 1) Operating characteristics (e.g., expected number of tests) for commonly used hierarchical and array-based algorithms, and 2) Optimal testing configurations for these same algorithms. Calculations for algorithms with single-disease assays are described in Hitt et al. (2019) <doi:10.1002/sim.8341> and with multiplex assays are described in Bilder et al. (2019) <doi:10.1111/biom.12988> and Hou et al. (2020) <doi:10.1093/biostatistics/kxy058>. Methods for the group testing estimation problem: 1) Estimation and inference procedures for an overall prevalence, and 2) Regression modeling for commonly used hierarchical and array-based algorithms. Estimation and confidence interval methods are described in Biggerstaff (2008) <doi:10.1198/108571108X379055> and Hepworth & Biggerstaff (2017) <doi:10.1007/s13253-017-0297-2>. Regression modeling is described in Xie (2001) <doi:10.1002/sim.817>.
| Version: | 1.0.2 |
| Imports: | graphics, grDevices, partitions, rBeta2009, Rcpp (≥ 1.0.0), Rdpack, stats, utils |
| LinkingTo: | Rcpp, RcppArmadillo |
| Published: | 2020-04-07 |
| Author: | Brianna Hitt 
[aut, cre],
Christopher Bilder
[aut],
Frank Schaarschmidt
[aut],
Brad Biggerstaff
[aut],
Christopher McMahan
[aut],
Joshua Tebbs
[aut],
Boan Zhang [ctb],
Michael Black [ctb],
Peijie Hou [ctb],
Peng Chen [ctb] |
| Maintainer: | Brianna Hitt <brianna.hitt at huskers.unl.edu> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | yes |
| CRAN checks: | binGroup2 results |
| Reference manual: | binGroup2.pdf |
| Package source: | binGroup2_1.0.2.tar.gz |
| Windows binaries: | r-devel: binGroup2_1.0.2.zip, r-release: binGroup2_1.0.2.zip, r-oldrel: binGroup2_1.0.2.zip |
| macOS binaries: | r-release: binGroup2_1.0.2.tgz, r-oldrel: binGroup2_1.0.2.tgz |
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