Implements tools for building and visualising admixture graphs and for extracting equations from them. These equations can be compared to f- statistics obtained from data to test the consistency of a graph against data – for example by comparing the sign of f_4-statistics with the signs predicted by the graph – and graph parameters (edge lengths and admixture proportions) can be fitted to observed statistics.
| Version: | 1.0.2 |
| Depends: | R (≥ 3.2.2) |
| Imports: | doParallel, dplyr, foreach, ggplot2, graphics, MASS, methods, neldermead, parallel, pracma, stats, utils, grDevices |
| Suggests: | knitr, rmarkdown, testthat |
| Published: | 2016-12-13 |
| Author: | Thomas Mailund [cre, aut], Kalle Leppala [aut], Svend Nielsen [aut] |
| Maintainer: | Thomas Mailund <mailund at birc.au.dk> |
| BugReports: | https://github.com/mailund/admixture_graph/issues |
| License: | GPL-2 |
| URL: | https://github.com/mailund/admixture_graph |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | admixturegraph results |
| Reference manual: | admixturegraph.pdf |
| Vignettes: |
Constructing and fitting admixture graphs to D statistics |
| Package source: | admixturegraph_1.0.2.tar.gz |
| Windows binaries: | r-devel: admixturegraph_1.0.2.zip, r-release: admixturegraph_1.0.2.zip, r-oldrel: admixturegraph_1.0.2.zip |
| macOS binaries: | r-release: admixturegraph_1.0.2.tgz, r-oldrel: admixturegraph_1.0.2.tgz |
| Old sources: | admixturegraph archive |
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