Given a protein multiple sequence alignment, it is daunting task to assess the effects of substitutions along sequence length. 'aaSEA' package is intended to help researchers to rapidly analyse property changes caused by single, multiple and correlated amino acid substitutions in proteins. Methods for identification of co-evolving positions from multiple sequence alignment are as described in : Pelé et al., (2017) <doi:10.4172/2379-1764.1000250>.
| Version: | 1.1.0 |
| Depends: | R (≥ 3.4.0) |
| Imports: | DT (≥ 0.4), networkD3 (≥ 0.4), shiny (≥ 1.0.5), shinydashboard (≥ 0.7.0), magrittr (≥ 1.5), Bios2cor (≥ 2.0), seqinr (≥ 3.4-5), plotly (≥ 4.7.1), Hmisc (≥ 4.1-1) |
| Suggests: | knitr, rmarkdown |
| Published: | 2019-11-09 |
| Author: | Raja Sekhara Reddy D.M |
| Maintainer: | Raja Sekhara Reddy D.M <raja.duvvuru at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | aaSEA results |
| Reference manual: | aaSEA.pdf |
| Vignettes: |
aaSEA Documentation |
| Package source: | aaSEA_1.1.0.tar.gz |
| Windows binaries: | r-devel: aaSEA_1.1.0.zip, r-release: aaSEA_1.1.0.zip, r-oldrel: aaSEA_1.1.0.zip |
| macOS binaries: | r-release: aaSEA_1.1.0.tgz, r-oldrel: aaSEA_1.1.0.tgz |
| Old sources: | aaSEA archive |
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