[aut, cre],
Yuanwei Xu [ctb]Inference of transmission tree from a dated phylogeny. Includes methods to simulate and analyse outbreaks. The methodology is described in Didelot et al. (2014) <doi:10.1093/molbev/msu121>, Didelot et al. (2017) <doi:10.1093/molbev/msw275>.
| Version: | 1.4.4 |
| Depends: | R (≥ 3.0.0) |
| Imports: | Rcpp (≥ 0.12.8), stats, graphics, ape |
| LinkingTo: | Rcpp |
| Suggests: | knitr, testthat, purrr, coda, grDevices, lattice |
| Published: | 2020-06-08 |
| Author: | Xavier Didelot
[aut, cre],
Yuanwei Xu [ctb] |
| Maintainer: | Xavier Didelot <xavier.didelot at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| SystemRequirements: | C++11 |
| Citation: | TransPhylo citation info |
| Materials: | README |
| CRAN checks: | TransPhylo results |
| Reference manual: | TransPhylo.pdf |
| Vignettes: |
Introducing the R package TransPhylo Inference of transmission tree from a dated phylogeny Simultaneous Inference of Multiple Transmission Trees Simulation of outbreak data |
| Package source: | TransPhylo_1.4.4.tar.gz |
| Windows binaries: | r-devel: TransPhylo_1.4.4.zip, r-release: TransPhylo_1.4.4.zip, r-oldrel: TransPhylo_1.4.4.zip |
| macOS binaries: | r-release: TransPhylo_1.4.4.tgz, r-oldrel: TransPhylo_1.4.4.tgz |
| Old sources: | TransPhylo archive |
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