Identify differentially expressed genes in RNA-seq count data using quasi-Poisson or quasi-negative binomial models with 'QL', 'QLShrink' and 'QLSpline' methods described by Lund, Nettleton, McCarthy, and Smyth (2012) <doi:10.1515/1544-6115.1826>. Report bias-reduced estimates of log fold changes.
| Version: | 1.0-10-2 |
| Depends: | R (≥ 3.5.0) |
| Imports: | edgeR, mgcv, pracma, utils, grDevices, graphics |
| Suggests: | BB, nleqslv |
| Enhances: | stats |
| Published: | 2018-05-10 |
| Author: | Steve Lund [aut, cre], Long Qu [aut, ctb], Klirk Bhasavanich [aut], Ian Marschner [aut] (The author of glm2::glm.fit2, which was modified slightly leading to glm.fit3 in this package.), R Core Team [aut] (The author of stats::glm.fit, which was modified slightly leading to glm.fit3 in this package.) |
| Maintainer: | Steve Lund <lundsp at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| CRAN checks: | QuasiSeq results |
| Reference manual: | QuasiSeq.pdf |
| Package source: | QuasiSeq_1.0-10-2.tar.gz |
| Windows binaries: | r-devel: QuasiSeq_1.0-10-2.zip, r-release: QuasiSeq_1.0-10-2.zip, r-oldrel: QuasiSeq_1.0-10-2.zip |
| macOS binaries: | r-release: QuasiSeq_1.0-10-2.tgz, r-oldrel: QuasiSeq_1.0-10-2.tgz |
| Old sources: | QuasiSeq archive |
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