Simulation tools for management strategy evaluation are provided for the 'DLMtool' operating model to inform data-rich fisheries. 'MSEtool' provides complementary assessment models of varying complexity with standardized reporting, diagnostic tools for evaluating assessment models within closed-loop simulation, and helper functions for building more complex operating models and model-based management procedures.
| Version: | 2.0.0 |
| Depends: | R (≥ 3.3.0), DLMtool (≥ 5.3.1) |
| Imports: | MASS, TMB, coda, corpcor, dplyr, gplots, grDevices, graphics, methods, mvtnorm, reshape2, snowfall, stats, utils, abind, rmarkdown |
| LinkingTo: | TMB, RcppEigen |
| Suggests: | knitr, testthat, r4ss, shiny |
| Published: | 2020-08-06 |
| Author: | Quang Huynh [aut], Tom Carruthers [aut, cre], Adrian Hordyk [aut], Chris Grandin [ctb] (iSCAM functions) |
| Maintainer: | Tom Carruthers <t.carruthers at oceans.ubc.ca> |
| BugReports: | https://github.com/tcarruth/MSEtool/issues |
| License: | GPL-3 |
| URL: | http://www.datalimitedtoolkit.org |
| NeedsCompilation: | yes |
| Materials: | README NEWS |
| CRAN checks: | MSEtool results |
| Reference manual: | MSEtool.pdf |
| Vignettes: |
1a. Delay-difference and delay-differential models 1. User guide to MSEtool 1b. Statistical catch-at-age (SCA) model 2. SRA model for conditioning operating models 2a. Mathematical description of the SRA model 2b. Configuring selectivity for the SRA model 1c. Surplus production model 1d. Virtual population analysis (VPA) 3. User guide for multiMSE |
| Package source: | MSEtool_2.0.0.tar.gz |
| Windows binaries: | r-devel: MSEtool_1.7.0.zip, r-release: MSEtool_1.7.0.zip, r-oldrel: MSEtool_1.7.0.zip |
| macOS binaries: | r-release: MSEtool_1.7.0.tgz, r-oldrel: MSEtool_1.7.0.tgz |
| Old sources: | MSEtool archive |
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