This package contains functions to carry out processing of high throughput data analysis and detection of putative hits/mutants. Contents include a function for post-hoc quality control for removal of outlier sample sets, a median-based normalization method for use in datasets where there are no explicit controls and where most of the responses are of the wildtype/no response class (see accompanying paper). The package also includes a way to prioritize individuals of interest using am empirical cumulative distribution function. Methods for generating synthetic data as well as data from the Chloroplast 2010 project are included.
| Version: | 1.2 |
| Depends: | R (≥ 2.12.1) |
| Imports: | doBy, gdata |
| Published: | 2012-01-27 |
| Author: | Shannon M. Bell, Lyle D. Burgoon |
| Maintainer: | Shannon M. Bell <bell.shannonm at gmail.com> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| CRAN checks: | MIPHENO results |
| Reference manual: | MIPHENO.pdf |
| Package source: | MIPHENO_1.2.tar.gz |
| Windows binaries: | r-devel: MIPHENO_1.2.zip, r-release: MIPHENO_1.2.zip, r-oldrel: MIPHENO_1.2.zip |
| macOS binaries: | r-release: MIPHENO_1.2.tgz, r-oldrel: MIPHENO_1.2.tgz |
| Old sources: | MIPHENO archive |
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