Extract full length circular RNA sequences and classify circular RNA using the output of circular RNA prediction tools, reference genome and the annotation file corresponding to the reference genome. This package uses the output of circular RNA prediction tools such as 'CIRI', 'CIRCExplorer' and the output of other state-of-the-art circular RNA prediction tools. Details about the circular RNA prediction procedure can be found in 'Yuan Gao, Jinfeng Wang and Fangqing Zhao' (2015) <doi:10.1186/s13059-014-0571-3> and 'Zhang XO, Wang HB, Zhang Y, Lu X, Chen LL and Yang L' (2014) <doi:10.1016/j.cell.2014.09.001>.
| Version: | 1.0.0 |
| Depends: | R (≥ 3.6.0), Biostrings, seqRFLP, stringi |
| Published: | 2020-01-31 |
| Author: | Md. Tofazzal Hossain, Yin Peng, Shengzhong Feng and Yanjie Wei |
| Maintainer: | Md. Tofazzal Hossain <tofazzal.stat at gmail.com> |
| BugReports: | https://github.com/tofazzal4720/FcircSEC/issues |
| License: | GPL-2 |
| URL: | https://github.com/tofazzal4720/FcircSEC |
| NeedsCompilation: | no |
| CRAN checks: | FcircSEC results |
| Reference manual: | FcircSEC.pdf |
| Package source: | FcircSEC_1.0.0.tar.gz |
| Windows binaries: | r-devel: FcircSEC_1.0.0.zip, r-release: FcircSEC_1.0.0.zip, r-oldrel: FcircSEC_1.0.0.zip |
| macOS binaries: | r-release: FcircSEC_1.0.0.tgz, r-oldrel: FcircSEC_1.0.0.tgz |
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