Implements a generalized version of the CDH test (<doi:10.1371/journal.pone.0028145> and <doi:10.1186/s12859-016-1006-9>) for detecting compound heterozygosity on a genome-wide level, due to usage of generalized linear models it allows flexible analysis of binary and continuous traits with covariates.
| Version: | 0.10.11 |
| Depends: | R (≥ 3.1.0), rJava (≥ 0.9-6) |
| Imports: | R.utils, RSQLite, biganalytics, bigmemory, collUtils, dplyr, ggplot2, methods, stringr, stats, haplo.stats |
| Suggests: | testthat |
| Published: | 2016-12-11 |
| Author: | Kaiyin Zhong, Fan Liu |
| Maintainer: | Kaiyin Zhong <kindlychung at gmail.com> |
| BugReports: | https://bitbucket.org/kindlychung/collapsabel2/issues |
| License: | GPL-3 |
| URL: | https://bitbucket.org/kindlychung/collapsabel2/overview |
| NeedsCompilation: | no |
| SystemRequirements: | PLINK2, Java (>= 8.0), mysql |
| Materials: | NEWS |
| CRAN checks: | CollapsABEL results |
| Reference manual: | CollapsABEL.pdf |
| Package source: | CollapsABEL_0.10.11.tar.gz |
| Windows binaries: | r-devel: CollapsABEL_0.10.11.zip, r-release: CollapsABEL_0.10.11.zip, r-oldrel: CollapsABEL_0.10.11.zip |
| macOS binaries: | r-release: CollapsABEL_0.10.11.tgz, r-oldrel: CollapsABEL_0.10.11.tgz |
| Old sources: | CollapsABEL archive |
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