Last updated on 2020-08-07 01:50:27 CEST.
| Package | WARN | OK |
|---|---|---|
| BIGL | 3 | 9 |
| drugCombo | 3 | 9 |
Current CRAN status: WARN: 3, OK: 9
Version: 1.5.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘analysis.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning: Transformation introduced infinite values in continuous x-axis
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Transformation introduced infinite values in continuous x-axis
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 199 rows containing non-finite values (stat_contour).
Warning in normalizePath(f2) :
path[1]="webshot46bb3a906022.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshot46bb3a906022.png': No such file or directory
Quitting from lines 245-248 (analysis.Rmd)
Error: processing vignette 'analysis.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘analysis.Rmd’
--- re-building ‘methodology.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘methodology.Rmd’
SUMMARY: processing the following file failed:
‘analysis.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.5.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘analysis.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning: Transformation introduced infinite values in continuous x-axis
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Transformation introduced infinite values in continuous x-axis
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 199 rows containing non-finite values (stat_contour).
Warning in normalizePath(f2) :
path[1]="webshotb2ebea04b0d.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshotb2ebea04b0d.png': No such file or directory
Quitting from lines 245-248 (analysis.Rmd)
Error: processing vignette 'analysis.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘analysis.Rmd’
--- re-building ‘methodology.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘methodology.Rmd’
SUMMARY: processing the following file failed:
‘analysis.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.5.2
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
Flavor: r-oldrel-macos-x86_64
Version: 1.5.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘analysis.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning: Transformation introduced infinite values in continuous x-axis
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Transformation introduced infinite values in continuous x-axis
Warning: Transformation introduced infinite values in continuous y-axis
Warning: Removed 199 rows containing non-finite values (stat_contour).
Warning in normalizePath(f2) :
path[1]="webshot179c74f661599.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshot179c74f661599.png': No such file or directory
Quitting from lines 245-248 (analysis.Rmd)
Error: processing vignette 'analysis.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘analysis.Rmd’
--- re-building ‘methodology.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘methodology.Rmd’
SUMMARY: processing the following file failed:
‘analysis.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64
Current CRAN status: WARN: 3, OK: 9
Version: 1.1.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘userGuide.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Using constraints: b = 1
Using constraints: b = 1
Running default monotherapy fitting. Note that if constraints are needed, run mono fitting manually first
Using constraints: b = 1
Using constraints: b = 1
PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
Warning in normalizePath(f2) :
path[1]="webshot3859528a1983.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshot3859528a1983.png': No such file or directory
Quitting from lines 357-358 (userGuide.Rmd)
Error: processing vignette 'userGuide.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘userGuide.Rmd’
SUMMARY: processing the following file failed:
‘userGuide.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.1.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘userGuide.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Using constraints: b = 1
Using constraints: b = 1
Running default monotherapy fitting. Note that if constraints are needed, run mono fitting manually first
Using constraints: b = 1
Using constraints: b = 1
PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
Warning in normalizePath(f2) :
path[1]="webshot108755888790.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshot108755888790.png': No such file or directory
Quitting from lines 357-358 (userGuide.Rmd)
Error: processing vignette 'userGuide.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘userGuide.Rmd’
SUMMARY: processing the following file failed:
‘userGuide.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.1
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Flavor: r-oldrel-macos-x86_64
Version: 1.1.1
Check: dependencies in R code
Result: NOTE
No protocol specified
Flavor: r-oldrel-macos-x86_64
Version: 1.1.1
Check: S3 generic/method consistency
Result: WARN
No protocol specified
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Flavor: r-oldrel-macos-x86_64
Version: 1.1.1
Check: replacement functions
Result: WARN
No protocol specified
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Flavor: r-oldrel-macos-x86_64
Version: 1.1.1
Check: foreign function calls
Result: NOTE
No protocol specified
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Flavor: r-oldrel-macos-x86_64
Version: 1.1.1
Check: R code for possible problems
Result: NOTE
No protocol specified
Flavor: r-oldrel-macos-x86_64
Version: 1.1.1
Check: for missing documentation entries
Result: WARN
No protocol specified
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavor: r-oldrel-macos-x86_64
Version: 1.1.1
Check: for code/documentation mismatches
Result: WARN
No protocol specified
No protocol specified
No protocol specified
Flavor: r-oldrel-macos-x86_64
Version: 1.1.1
Check: Rd \usage sections
Result: NOTE
No protocol specified
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavor: r-oldrel-macos-x86_64
Version: 1.1.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘userGuide.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
No protocol specified
Warning in rgl.init(initValue, onlyNULL) :
RGL: unable to open X11 display
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Using constraints: b = 1
Using constraints: b = 1
Running default monotherapy fitting. Note that if constraints are needed, run mono fitting manually first
Using constraints: b = 1
Using constraints: b = 1
PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
Warning in normalizePath(f2) :
path[1]="webshot219036569873.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshot219036569873.png': No such file or directory
Quitting from lines 357-358 (userGuide.Rmd)
Error: processing vignette 'userGuide.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘userGuide.Rmd’
SUMMARY: processing the following file failed:
‘userGuide.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64