CRAN Package Check Results for Maintainer Sylvain Mareschal <maressyl at gmail.com>

CRAN Package Check Results for Maintainer ‘Sylvain Mareschal <maressyl at gmail.com>’

Last updated on 2020-08-07 01:50:26 CEST.

Package	NOTE	OK
cghRA	2	10
LPS	12
MLPA	1	11
ODB		12
Rgb		12

Package cghRA

Current CRAN status: NOTE: 2, OK: 10

Version: 1.6.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘GLAD’
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.6.0
Check: dependencies in R code
Result: NOTE
    No protocol specified
    No protocol specified
    No protocol specified
    No protocol specified
Flavor: r-oldrel-macos-x86_64

Package LPS

Current CRAN status: NOTE: 12

Version: 1.0.10
Check: R code for possible problems
Result: NOTE
    LPS: no visible global function definition for 'update.formula'
    LPS: no visible global function definition for 'model.frame'
    LPS: no visible binding for global variable 'sd'
    LPS.coeff: no visible global function definition for 'is'
    LPS.coeff: no visible global function definition for 'model.frame'
    LPS.coeff: no visible global function definition for 'terms'
    LPS.coeff: no visible binding for global variable 'var'
    LPS.coeff: no visible global function definition for 'pt'
    LPS.k.form: no visible global function definition for 'head'
    LPS.k.form: no visible global function definition for 'as.formula'
    LPS.p.form: no visible global function definition for 'p.adjust'
    LPS.p.form: no visible global function definition for 'as.formula'
    OVL: no visible global function definition for 'qnorm'
    OVL: no visible global function definition for 'dnorm'
    clusterize: no visible global function definition for 'lcm'
    clusterize: no visible binding for global variable 'median'
    clusterize: no visible binding for global variable 'mad'
    clusterize: no visible binding for global variable 'sd'
    clusterize: no visible global function definition for 'as.dendrogram'
    clusterize: no visible global function definition for 'layout'
    clusterize: no visible global function definition for 'par'
    clusterize: no visible global function definition for 'legend'
    dist.COR: no visible global function definition for 'cor'
    hclust.ward: no visible global function definition for 'hclust'
    heat: no visible global function definition for 'col2rgb'
    heat: no visible global function definition for 'rgb'
    heat.map: no visible global function definition for 'lcm'
    heat.map: no visible global function definition for 'rainbow'
    heat.map: no visible global function definition for 'layout'
    heat.map: no visible binding for global variable 'median'
    heat.map: no visible binding for global variable 'mad'
    heat.map: no visible binding for global variable 'sd'
    heat.map: no visible global function definition for 'strwidth'
    heat.map: no visible global function definition for 'par'
    heat.map: no visible global function definition for 'rect'
    heat.map: no visible global function definition for 'mtext'
    heat.map: no visible global function definition for 'image'
    heat.map: no visible global function definition for 'axis'
    heat.map: no visible global function definition for 'box'
    heat.scale: no visible global function definition for 'par'
    heat.scale: no visible global function definition for 'rect'
    heat.scale: no visible global function definition for 'head'
    heat.scale: no visible global function definition for 'tail'
    heat.scale: no visible global function definition for 'box'
    heat.scale: no visible global function definition for 'axis'
    heat.scale: no visible global function definition for 'mtext'
    plot.LPS: no visible global function definition for 'dnorm'
    plot.LPS: no visible global function definition for 'predict'
    plot.LPS: no visible global function definition for 'par'
    plot.LPS: no visible global function definition for 'abline'
    plot.LPS: no visible global function definition for 'tail'
    plot.LPS: no visible global function definition for 'head'
    plot.LPS: no visible global function definition for 'rect'
    plot.LPS: no visible global function definition for 'mtext'
    plot.LPS: no visible global function definition for 'points'
    plot.LPS: no visible global function definition for 'axis'
    plot.LPS: no visible global function definition for 'legend'
    predict.LPS: no visible global function definition for 'lcm'
    predict.LPS: no visible global function definition for 'dnorm'
    predict.LPS: no visible global function definition for 'layout'
    predict.LPS: no visible global function definition for 'axis'
    predict.LPS: no visible global function definition for 'head'
    predict.LPS: no visible global function definition for 'tail'
    predict.LPS: no visible global function definition for 'abline'
    predict.LPS: no visible global function definition for 'box'
    predict.LPS: no visible global function definition for 'par'
    predict.LPS: no visible global function definition for 'legend'
    predict.LPS: no visible global function definition for 'rect'
    predict.LPS: no visible global function definition for 'text'
    rain: no visible global function definition for 'rainbow'
    surv.colors: no visible global function definition for 'rgb'
    surv.colors: no visible global function definition for 'colorRamp'
    surv.scale: no visible global function definition for 'layout'
    surv.scale: no visible global function definition for 'par'
    surv.scale: no visible global function definition for 'rect'
    surv.scale: no visible global function definition for 'rgb'
    surv.scale: no visible global function definition for 'colorRamp'
    surv.scale: no visible global function definition for 'axis'
    surv.scale: no visible global function definition for 'mtext'
    surv.scale: no visible global function definition for 'box'
    var.formula: no visible global function definition for 'is'
    Undefined global functions or variables:
     abline as.dendrogram as.formula axis box col2rgb colorRamp cor dnorm
     hclust head image is layout lcm legend mad median model.frame mtext
     p.adjust par points predict pt qnorm rainbow rect rgb sd strwidth
     tail terms text update.formula var
    Consider adding
     importFrom("grDevices", "col2rgb", "colorRamp", "rainbow", "rgb")
     importFrom("graphics", "abline", "axis", "box", "image", "layout",
     "lcm", "legend", "mtext", "par", "points", "rect",
     "strwidth", "text")
     importFrom("methods", "is")
     importFrom("stats", "as.dendrogram", "as.formula", "cor", "dnorm",
     "hclust", "mad", "median", "model.frame", "p.adjust",
     "predict", "pt", "qnorm", "sd", "terms", "update.formula",
     "var")
     importFrom("utils", "head", "tail")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64

Version: 1.0.10
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘limma’
Flavor: r-oldrel-macos-x86_64

Version: 1.0.10
Check: R code for possible problems
Result: NOTE
    LPS: no visible global function definition for ‘update.formula’
    LPS: no visible global function definition for ‘model.frame’
    LPS: no visible binding for global variable ‘sd’
    LPS.coeff: no visible global function definition for ‘is’
    LPS.coeff: no visible global function definition for ‘model.frame’
    LPS.coeff: no visible global function definition for ‘terms’
    LPS.coeff: no visible binding for global variable ‘var’
    LPS.coeff: no visible global function definition for ‘pt’
    LPS.k.form: no visible global function definition for ‘head’
    LPS.k.form: no visible global function definition for ‘as.formula’
    LPS.p.form: no visible global function definition for ‘p.adjust’
    LPS.p.form: no visible global function definition for ‘as.formula’
    OVL: no visible global function definition for ‘qnorm’
    OVL: no visible global function definition for ‘dnorm’
    clusterize: no visible global function definition for ‘lcm’
    clusterize: no visible binding for global variable ‘median’
    clusterize: no visible binding for global variable ‘mad’
    clusterize: no visible binding for global variable ‘sd’
    clusterize: no visible global function definition for ‘as.dendrogram’
    clusterize: no visible global function definition for ‘layout’
    clusterize: no visible global function definition for ‘par’
    clusterize: no visible global function definition for ‘legend’
    dist.COR: no visible global function definition for ‘cor’
    hclust.ward: no visible global function definition for ‘hclust’
    heat: no visible global function definition for ‘col2rgb’
    heat: no visible global function definition for ‘rgb’
    heat.map: no visible global function definition for ‘lcm’
    heat.map: no visible global function definition for ‘rainbow’
    heat.map: no visible global function definition for ‘layout’
    heat.map: no visible binding for global variable ‘median’
    heat.map: no visible binding for global variable ‘mad’
    heat.map: no visible binding for global variable ‘sd’
    heat.map: no visible global function definition for ‘strwidth’
    heat.map: no visible global function definition for ‘par’
    heat.map: no visible global function definition for ‘plot’
    heat.map: no visible global function definition for ‘rect’
    heat.map: no visible global function definition for ‘mtext’
    heat.map: no visible global function definition for ‘image’
    heat.map: no visible global function definition for ‘axis’
    heat.map: no visible global function definition for ‘box’
    heat.scale: no visible global function definition for ‘par’
    heat.scale: no visible global function definition for ‘plot’
    heat.scale: no visible global function definition for ‘rect’
    heat.scale: no visible global function definition for ‘head’
    heat.scale: no visible global function definition for ‘tail’
    heat.scale: no visible global function definition for ‘box’
    heat.scale: no visible global function definition for ‘axis’
    heat.scale: no visible global function definition for ‘mtext’
    plot.LPS: no visible global function definition for ‘dnorm’
    plot.LPS: no visible global function definition for ‘predict’
    plot.LPS: no visible global function definition for ‘plot’
    plot.LPS: no visible global function definition for ‘par’
    plot.LPS: no visible global function definition for ‘abline’
    plot.LPS: no visible global function definition for ‘tail’
    plot.LPS: no visible global function definition for ‘head’
    plot.LPS: no visible global function definition for ‘rect’
    plot.LPS: no visible global function definition for ‘mtext’
    plot.LPS: no visible global function definition for ‘points’
    plot.LPS: no visible global function definition for ‘axis’
    plot.LPS: no visible global function definition for ‘legend’
    predict.LPS: no visible global function definition for ‘lcm’
    predict.LPS: no visible global function definition for ‘dnorm’
    predict.LPS: no visible global function definition for ‘layout’
    predict.LPS: no visible global function definition for ‘axis’
    predict.LPS: no visible global function definition for ‘head’
    predict.LPS: no visible global function definition for ‘tail’
    predict.LPS: no visible global function definition for ‘abline’
    predict.LPS: no visible global function definition for ‘box’
    predict.LPS: no visible global function definition for ‘par’
    predict.LPS: no visible global function definition for ‘legend’
    predict.LPS: no visible global function definition for ‘rect’
    predict.LPS: no visible global function definition for ‘text’
    rain: no visible global function definition for ‘rainbow’
    surv.colors: no visible global function definition for ‘rgb’
    surv.colors: no visible global function definition for ‘colorRamp’
    surv.scale: no visible global function definition for ‘layout’
    surv.scale: no visible global function definition for ‘par’
    surv.scale: no visible global function definition for ‘plot’
    surv.scale: no visible global function definition for ‘rect’
    surv.scale: no visible global function definition for ‘rgb’
    surv.scale: no visible global function definition for ‘colorRamp’
    surv.scale: no visible global function definition for ‘axis’
    surv.scale: no visible global function definition for ‘mtext’
    surv.scale: no visible global function definition for ‘box’
    var.formula: no visible global function definition for ‘is’
    Undefined global functions or variables:
     abline as.dendrogram as.formula axis box col2rgb colorRamp cor dnorm
     hclust head image is layout lcm legend mad median model.frame mtext
     p.adjust par plot points predict pt qnorm rainbow rect rgb sd
     strwidth tail terms text update.formula var
    Consider adding
     importFrom("grDevices", "col2rgb", "colorRamp", "rainbow", "rgb")
     importFrom("graphics", "abline", "axis", "box", "image", "layout",
     "lcm", "legend", "mtext", "par", "plot", "points", "rect",
     "strwidth", "text")
     importFrom("methods", "is")
     importFrom("stats", "as.dendrogram", "as.formula", "cor", "dnorm",
     "hclust", "mad", "median", "model.frame", "p.adjust",
     "predict", "pt", "qnorm", "sd", "terms", "update.formula",
     "var")
     importFrom("utils", "head", "tail")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Package MLPA

Current CRAN status: NOTE: 1, OK: 11

Version: 1.10.0
Check: dependencies in R code
Result: NOTE
No protocol specified
No protocol specified
Flavor: r-oldrel-macos-x86_64

Package ODB

Current CRAN status: OK: 12

Package Rgb

Current CRAN status: OK: 12

Additional issues

rchk