Last updated on 2020-08-07 01:49:46 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.5 | 152.58 | 546.42 | 699.00 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.5 | 104.81 | 402.68 | 507.49 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.5 | 673.41 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.5 | 518.17 | OK | |||
| r-devel-windows-ix86+x86_64 | 2.0.5 | 329.00 | 458.00 | 787.00 | NOTE | |
| r-patched-linux-x86_64 | 2.0.5 | 102.36 | 406.68 | 509.04 | OK | |
| r-patched-solaris-x86 | 2.0.5 | 295.30 | ERROR | |||
| r-release-linux-x86_64 | 2.0.5 | 98.95 | 419.61 | 518.56 | OK | |
| r-release-macos-x86_64 | 2.0.5 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 2.0.5 | 326.00 | 563.00 | 889.00 | NOTE | |
| r-oldrel-macos-x86_64 | 2.0.5 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 2.0.5 | 236.00 | 475.00 | 711.00 | NOTE |
Version: 2.0.5
Check: installed package size
Result: NOTE
installed size is 14.2Mb
sub-directories of 1Mb or more:
libs 12.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 2.0.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [13s/13s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(gwsem)
Loading required package: OpenMx
To take full advantage of multiple cores, use:
mxOption(key='Number of Threads', value=parallel::detectCores()) #now
Sys.setenv(OMP_NUM_THREADS=parallel::detectCores()) #before library(OpenMx)
>
> test_check("gwsem")
Error: C stack usage 273650804 is too close to the limit
── 1. Error: (unknown) (@test-covariate.R#36) ─────────────────────────────────
This model has 5 matrices, but the backend has returned 0 values
Backtrace:
1. gwsem::GWAS(...)
2. OpenMx::mxRun(model)
3. OpenMx:::runHelper(...)
4. OpenMx:::updateModelMatrices(model, flatModel, output$matrices)
Error: C stack usage 273650804 is too close to the limit
── 2. Error: (unknown) (@test-formats.R#24) ───────────────────────────────────
This model has 4 matrices, but the backend has returned 0 values
Backtrace:
1. gwsem::GWAS(...)
2. OpenMx::mxRun(model)
3. OpenMx:::runHelper(...)
4. OpenMx:::updateModelMatrices(model, flatModel, output$matrices)
Error: C stack usage 273650804 is too close to the limit
── 3. Error: gxe data roundtrip (@test-gxe.R#36) ──────────────────────────────
This model has 7 matrices, but the backend has returned 0 values
Backtrace:
1. gwsem::GWAS(...)
2. OpenMx::mxRun(model)
3. OpenMx:::runHelper(...)
4. OpenMx:::updateModelMatrices(model, flatModel, output$matrices)
── 4. Error: (unknown) (@test-model.R#75) ─────────────────────────────────────
incompatible dimensions
Backtrace:
1. testthat::expect_equal(cor(ml$P, pgen$P), 1, tolerance = 0.001)
4. stats::cor(ml$P, pgen$P)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 16 | SKIPPED: 0 | WARNINGS: 4 | FAILED: 4 ]
1. Error: (unknown) (@test-covariate.R#36)
2. Error: (unknown) (@test-formats.R#24)
3. Error: gxe data roundtrip (@test-gxe.R#36)
4. Error: (unknown) (@test-model.R#75)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86